Small Angle Scattering Biological Data Bank SASBDB

Browse by DISSEMINATION: Published

SASDAT4 – uPAR wild-type

Urokinase plasminogen activator surface receptor experimental SAS data

Sample:	Urokinase plasminogen activator surface receptor monomer, 37 kDa Homo sapiens protein
Buffer:	25 mM Sodium Phosphate 5 % Glycerol 50 mM NaSO4, pH: 7.2
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Jun 10

A flexible multidomain structure drives the function of the urokinase-type plasminogen activator receptor (uPAR). J Biol Chem 287(41):34304-15 (2012)
Mertens HD, Kjaergaard M, Mysling S, Gårdsvoll H, Jørgensen TJ, Svergun DI, Ploug M

R_g^Guinier	2.8	nm
D_max	9.7	nm
Volume^Porod	69	nm³

SASDAU4 – uPAR H47C/N259C

Sample:	Urokinase plasminogen activator surface receptor monomer, 37 kDa Homo sapiens protein
Buffer:	25 mM Sodium Phosphate 5 % Glycerol 50 mM NaSO4, pH: 7.2
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Jun 10

R_g^Guinier	2.2	nm
D_max	7.0	nm
Volume^Porod	57	nm³

SASDAV4 – uPAR wild-type AE105 complex

Urokinase plasminogen activator surface receptorsynthetic peptide AE105 experimental SAS data

Urokinase plasminogen activator surface receptor synthetic peptide AE105 Kratky plot

Sample:	Urokinase plasminogen activator surface receptor monomer, 37 kDa Homo sapiens protein Synthetic peptide AE105 monomer, 1 kDa protein
Buffer:	25 mM Sodium Phosphate 5 % Glycerol 50 mM NaSO4, pH: 7.2
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Jun 10

R_g^Guinier	2.5	nm
D_max	8.5	nm
Volume^Porod	61	nm³

SASDAW4 – uPAR wild-type AE234 complex

Urokinase plasminogen activator surface receptorsynthetic peptide AE234 experimental SAS data

Urokinase plasminogen activator surface receptor synthetic peptide AE234 Kratky plot

Sample:	Urokinase plasminogen activator surface receptor monomer, 37 kDa Homo sapiens protein Synthetic peptide AE234 monomer, 1 kDa protein
Buffer:	25 mM Sodium Phosphate 5 % Glycerol 50 mM NaSO4, pH: 7.2
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Jun 10

R_g^Guinier	2.4	nm
D_max	8.3	nm
Volume^Porod	57	nm³

SASDAX4 – uPAR wild-type ATF complex

Urokinase plasminogen activator surface receptorUrokinase-type plasminogen activator experimental SAS data

Urokinase plasminogen activator surface receptor Urokinase-type plasminogen activator Kratky plot

Sample:	Urokinase plasminogen activator surface receptor monomer, 37 kDa Homo sapiens protein Urokinase-type plasminogen activator monomer, 49 kDa Homo sapiens protein
Buffer:	25 mM Sodium Phosphate 5 % Glycerol 50 mM NaSO4, pH: 7.2
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Jun 10

R_g^Guinier	2.8	nm
D_max	9.4	nm
Volume^Porod	102	nm³

SASDA85 – CHD4 (PP-CC-AH-D)

Human Chromatin Remodeler CHD4 (363-1353) experimental SAS data

Sample:	Human Chromatin Remodeler CHD4 (363-1353) monomer, 117 kDa Homo sapiens protein
Buffer:	50 mM HEPES 5% Glycerol 300 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Nov 13

The PHD and chromo domains regulate the ATPase activity of the human chromatin remodeler CHD4. J Mol Biol 422(1):3-17 (2012)
Watson AA, Mahajan P, Mertens HD, Deery MJ, Zhang W, Pham P, Du X, Bartke T, Zhang W, Edlich C, Berridge G, Chen Y, Burgess-Brown NA, Kouzarides T, Wiechens N, Owen-Hughes T, Svergun DI, Gileadi O, Laue ED

R_g^Guinier	4.9	nm
D_max	17.4	nm

SASDA95 – CHD4 (CC-AH-D)

Human Chromatin Remodeler CHD4 (494-1353) experimental SAS data

Sample:	Human Chromatin Remodeler CHD4 (494-1353) monomer, 101 kDa Homo sapiens protein
Buffer:	50 mM HEPES 50 mM KCl, pH: 7.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Nov 13

R_g^Guinier	4.0	nm
D_max	14.5	nm

SASDAA5 – CHD4 (AH)

Human Chromatin Remodeler CHD4 (685-1233) experimental SAS data

Sample:	Human Chromatin Remodeler CHD4 (685-1233) monomer, 63 kDa Homo sapiens protein
Buffer:	50 mM HEPES 50 mM KCl, pH: 7.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Nov 13

R_g^Guinier	4.0	nm
D_max	14.5	nm

SASDAB5 – CHD4 (PP-CC)

Human Chromatin Remodeler CHD4 (363-682) experimental SAS data

Sample:	Human Chromatin Remodeler CHD4 (363-682) monomer, 38 kDa Homo sapiens protein
Buffer:	50 mM HEPES 50 mM KCl, pH: 7.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Nov 13

R_g^Guinier	3.0	nm
D_max	10.5	nm

SASDAH5 – Complex of Hfq with DsrA

RNA chaperone HfqRNA DsrA experimental SAS data

Sample:	RNA chaperone Hfq hexamer, 67 kDa Escherichia coli protein RNA DsrA monomer, 12 kDa RNA
Buffer:	50 mM Tris-HCL 150 mM NaCl 1.0 mM DTT, pH: 7.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2010 Nov 16

Structural flexibility of RNA as molecular basis for Hfq chaperone function. Nucleic Acids Res 40(16):8072-84 (2012)
Ribeiro Ede A Jr, Beich-Frandsen M, Konarev PV, Shang W, Vecerek B, Kontaxis G, Hämmerle H, Peterlik H, Svergun DI, Bläsi U, Djinović-Carugo K

R_g^Guinier	4.3	nm
D_max	14.5	nm
Volume^Porod	210	nm³

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