Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDRD5 – A ssr1698 Dri1 hemoprotein, H79A:R90A variant + heme

Ssr1698 protein (H79A:R90A) experimental SAS data

Sample:	Ssr1698 protein (H79A:R90A) dimer, 22 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Mar 30

A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun 15(1):3167 (2024)
Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy M, Biswas S, Byrnes J, Kreitler DF, Cheng JF, Ghosh A, Almo SC, Iwai M, Niyogi KK, Pakrasi HB, Sarangi R, van Dam H, Yang L, Blaby IK, Blaby-Haas CE

R_g^Guinier	2.0	nm
D_max	6.3	nm
Volume^Porod	28	nm³

SASDRE5 – A ssr1698 Dri1 hemoprotein, H79A:R90A variant

Sample:	Ssr1698 protein (H79A:R90A) monomer, 11 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Mar 30

R_g^Guinier	1.6	nm
D_max	5.5	nm
Volume^Porod	12	nm³

SASDRF5 – A ssr1698 Dri1 hemoprotein, H21A variant

Ssr1698 protein (H21A) experimental SAS data

Sample:	Ssr1698 protein (H21A) monomer, 11 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Jun 10

R_g^Guinier	1.6	nm
D_max	5.7	nm
Volume^Porod	12	nm³

SASDRG5 – A ssr1698 Dri1 hemoprotein, wild-type (apo) variant + heme

Sample:	Ssr1698 protein dimer, 23 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Sep 27

R_g^Guinier	2.0	nm
D_max	6.3	nm
Volume^Porod	29	nm³

SASDRH5 – A ssr1698 Dri1 hemoprotein, wild-type (as-purified) variant

Sample:	Ssr1698 protein monomer, 11 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2021 Dec 12

R_g^Guinier	1.6	nm
D_max	5.3	nm
Volume^Porod	12	nm³

SASDRJ5 – A ssr1698 Dri1 hemoprotein, wild-type (as-purified) variant + heme

Sample:	Ssr1698 protein dimer, 23 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Jun 13

R_g^Guinier	1.9	nm
D_max	6.2	nm
Volume^Porod	26	nm³

SASDRK5 – A ssr1698 Dri1 hemoprotein, wild-type (Zn2+) variant

Sample:	Ssr1698 protein monomer, 11 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Sep 27

R_g^Guinier	1.6	nm
D_max	5.0	nm
Volume^Porod	10	nm³

SASDRL5 – A ssr1698 Dri1 hemoprotein, wild-type (Zn2+) variant + heme

Sample:	Ssr1698 protein dimer, 23 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Sep 27

R_g^Guinier	2.0	nm
D_max	6.2	nm
Volume^Porod	29	nm³

SASDRM5 – A ssr1698 Dri1 hemoprotein, wild-type (Co2+) variant + heme

Sample:	Ssr1698 protein dimer, 23 kDa Synechocystis sp. (strain … protein
Buffer:	50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Jun 13

R_g^Guinier	2.0	nm
D_max	6.3	nm
Volume^Porod	29	nm³

SASDUC2 – TIP120 (designed based on Truncated Icosahedral Protein composed of 60-mer fusion proteins)

N-terminal split fragment of a single subunit of Truncated Icosahedral Protein composed of 60-mer fusion proteinsC-terminal split fragment of a single subunit of Truncated Isosahedral Protein composed of 60-mer fusion proteins experimental SAS data

Sample:	N-terminal split fragment of a single subunit of Truncated Icosahedral Protein composed of 60-mer fusion proteins, 360 kDa synthetic construct protein C-terminal split fragment of a single subunit of Truncated Isosahedral Protein composed of 60-mer fusion proteins, 715 kDa synthetic construct protein
Buffer:	25 mM HEPES, 100 mM NaCl, 1 mM EDTA, 5%(v/v) glycerol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2023 Nov 27

Fusion then fission: splitting and reassembly of an artificial fusion-protein nanocage. Chem Commun (Camb) (2024)
Ohara N, Kawakami N, Arai R, Adachi N, Ikeda A, Senda T, Miyamoto K

R_g^Guinier	9.2	nm
D_max	22.5	nm
Volume^Porod	3480	nm³

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