Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDE37 – Lysine-specific demethylase 5B, KDM5B, in HEPES buffer

Lysine-specific demethylase 5B experimental SAS data

Sample:	Lysine-specific demethylase 5B monomer, 176 kDa Homo sapiens protein
Buffer:	50 mM HEPES, 300 mM NaCl, 5% (v/v) glycerol, 1mM DTT, pH: 7.7
Experiment:	SAXS data collected at Xenocs BioXolver L with GeniX3D, University of Copenhagen, Department of Drug Design and Pharmacology on 2018 Oct 24

Molecular architecture of the Jumonji C family histone demethylase KDM5B. Sci Rep 9(1):4019 (2019)
Dorosz J, Kristensen LH, Aduri NG, Mirza O, Lousen R, Bucciarelli S, Mehta V, Sellés-Baiget S, Solbak SMØ, Bach A, Mesa P, Hernandez PA, Montoya G, Nguyen TTTN, Rand KD, Boesen T, Gajhede M

R_g^Guinier	8.8	nm
D_max	26.9	nm

SASDDG5 – Mammalian prion protein mRNA (PrP mRNA wild type)

octo-repeat PrP mRNA experimental SAS data

Sample:	Octo-repeat PrP mRNA dimer, 144 kDa human PrP ORF RNA
Buffer:	10 mM Tris buffer, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2016 Nov 4

Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes. Sci Rep 9(1):2465 (2019)
Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z

R_g^Guinier	7.4	nm
D_max	25.0	nm
Volume^Porod	165	nm³

SASDDH5 – Mammalian prion protein mRNA (PrP mRNA wild type) with KCl

Sample:	Octo-repeat PrP mRNA dimer, 144 kDa human PrP ORF RNA
Buffer:	10 mM Tris buffer with 100 mM KCl, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6

R_g^Guinier	8.8	nm
D_max	31.0	nm
Volume^Porod	240	nm³

SASDDJ5 – Mammalian prion protein mRNA (PrP mRNA wild type) with LiCl

Sample:	Octo-repeat PrP mRNA dimer, 144 kDa human PrP ORF RNA
Buffer:	10 mM Tris buffer with 100 mM LiCl, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6

R_g^Guinier	9.0	nm
D_max	31.0	nm
Volume^Porod	225	nm³

SASDDK5 – Mammalian prion protein mRNA (PrP mRNA wild type) with KCl and pyridostatin (PDS)

Sample:	Octo-repeat PrP mRNA dimer, 144 kDa human PrP ORF RNA
Buffer:	10 mM Tris buffer with 100 mM KCl and 1 mM PDS, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6

R_g^Guinier	9.1	nm
D_max	31.0	nm
Volume^Porod	220	nm³

SASDDL5 – Mutant mammalian prion protein mRNA (octo-repeat PrP mRNA)

octo-repeat PrP mRNA mutant experimental SAS data

Sample:	Octo-repeat PrP mRNA mutant dimer, 144 kDa human PrP ORF RNA
Buffer:	10 mM Tris buffer, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6

R_g^Guinier	7.0	nm
D_max	24.0	nm
Volume^Porod	150	nm³

SASDDM5 – Mutant mammalian prion protein mRNA (octo-repeat PrP mRNA) with KCl

Sample:	Octo-repeat PrP mRNA mutant dimer, 144 kDa human PrP ORF RNA
Buffer:	10 mM Tris buffer with 100 mM KCl, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6

R_g^Guinier	9.0	nm
D_max	33.0	nm
Volume^Porod	210	nm³

SASDDN5 – Mutant mammalian prion protein mRNA (octo-repear PrP mRNA) with LiCl

Sample:	Octo-repeat PrP mRNA mutant dimer, 144 kDa human PrP ORF RNA
Buffer:	10 mM Tris buffer with 100 mM LiCl, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6

R_g^Guinier	8.9	nm
D_max	33.0	nm
Volume^Porod	223	nm³

SASDDP5 – Mutant mammalian prion protein mRNA (octo-repear PrP mRNA) with KCl and pyridostatin (PDS)

Sample:	Octo-repeat PrP mRNA mutant dimer, 144 kDa human PrP ORF RNA
Buffer:	10 mM Tris buffer with 100 mM KCl and 1 mM PDS, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2017 Jun 6

R_g^Guinier	9.2	nm
D_max	33.0	nm
Volume^Porod	260	nm³

SASDDQ4 – LIM/homeobox protein Lhx4 LIM domains fused to the LIM interaction domain (LID) of Insulin gene enhancer protein ISL-2

LIM/homeobox protein Lhx4Insulin gene enhancer protein ISL-2 experimental SAS data

Sample:	LIM/homeobox protein Lhx4 monomer, 15 kDa Mus musculus protein Insulin gene enhancer protein ISL-2 monomer, 4 kDa Mus musculus protein
Buffer:	20 mM Tris, 150 mM NaCl, 1 mM TCEP, pH: 8
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Nov 19

Mutation in a flexible linker modulates binding affinity for modular complexes. Proteins (2019)
Stokes PH, Robertson NO, Silva AP, Estephan T, Trewhella J, Guss JM, Matthews JM

R_g^Guinier	2.2	nm
D_max	8.0	nm
Volume^Porod	20	nm³

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