Browse by MODEL: Hybrid

SASDF76 – Polyphosphate-targeting protein A

Polyphosphate-targeting protein A experimental SAS data
CORAL model
Sample: Polyphosphate-targeting protein A dimer, 79 kDa Streptomyces chartreusis protein
Buffer: 20 mM Tris-HCl 400 mM NaCl, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Nov 24
Structural and biochemical analysis of a phosin from Streptomyces chartreusis reveals a combined polyphosphate- and metal-binding fold. FEBS Lett (2019)
Werten S, Rustmeier NH, Gemmer M, Virolle MJ, Hinrichs W
RgGuinier 3.5 nm
Dmax 11.8 nm
VolumePorod 124 nm3

SASDFK3 – Splicing factor, proline- and glutamine-rich (SFPQ)

Splicing factor, proline- and glutamine-rich experimental SAS data
CORAL model
Sample: Splicing factor, proline- and glutamine-rich dimer, 60 kDa Homo sapiens protein
Buffer: 20 mM Tris-HCl, 250 mM NaCl, 5% (v/v) glycerol, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2018 Apr 19
A new crystal structure and small-angle X-ray scattering analysis of the homodimer of human SFPQ. Acta Crystallogr F Struct Biol Commun 75(Pt 6):439-449 (2019)
Hewage TW, Caria S, Lee M
RgGuinier 2.8 nm
Dmax 8.2 nm
VolumePorod 91 nm3

SASDF86 – Human Galectin-10 (Tyr69Glu mutant)

Galectin-10 Tyr69Glu experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Galectin-10 Tyr69Glu dimer, 33 kDa Homo sapiens protein
Buffer: 20 mM Hepes 150 NaCl, pH: 7.4
Experiment: SAXS data collected at SWING, SOLEIL on 2018 Feb 4
Protein crystallization promotes type 2 immunity and is reversible by antibody treatment. Science 364(6442) (2019)
Persson EK, Verstraete K, Heyndrickx I, Gevaert E, Aegerter H, Percier JM, Deswarte K, Verschueren KHG, Dansercoer A, Gras D, Chanez P, Bachert C, Gonçalves A, Van Gorp H, De Haard H, Blanchetot C, Saunders M, Hammad H, Savvides SN, Lambrecht BN
RgGuinier 2.1 nm
Dmax 8.2 nm
VolumePorod 46 nm3

SASDEL6 – Glucosamine kinase from Streptacidiphilus jiangxiensis

Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2016 Nov 24
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.6 nm
Dmax 8.0 nm
VolumePorod 72 nm3

SASDEM6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 0.2 M D-glucosamine

Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 0.2 M D-glucosamine, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2017 Nov 20
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.6 nm
Dmax 8.0 nm
VolumePorod 78 nm3

SASDEN6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 1 mM ATP

Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 1 mM ATP, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2016 Nov 24
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.5 nm
Dmax 7.8 nm
VolumePorod 73 nm3

SASDEP6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 0.2 M D-glucosamine and 1 mM ATP

Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 0.2 M D-glucosamine, 1 mM ATP, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2017 Nov 20
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.5 nm
Dmax 7.7 nm
VolumePorod 76 nm3

SASDEQ6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 50 mM D-glucose

Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 50 mM D-glucose, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2018 Apr 13
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.6 nm
Dmax 8.0 nm
VolumePorod 73 nm3

SASDER6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 50 mM D-glucose and 1 mM ATP

Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 50 mM D-glucose, 1 mM ATP, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2016 Nov 24
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.5 nm
Dmax 7.7 nm
VolumePorod 73 nm3

SASDEC7 – Human TRPML2 Ion Channel Extracytosolic/Lumenal Domain at pH 7.4 without Calcium

Transient receptor potential channel mucolipin 2 experimental SAS data
CORAL model
Sample: Transient receptor potential channel mucolipin 2 tetramer, 93 kDa Homo sapiens protein
Buffer: 10 mM HEPES pH 7.4, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BM29, ESRF on 2018 Oct 18
Structure of the Human TRPML2 Ion Channel Extracytosolic/Lumenal Domain. Structure (2019)
Viet KK, Wagner A, Schwickert K, Hellwig N, Brennich M, Bader N, Schirmeister T, Morgner N, Schindelin H, Hellmich UA
RgGuinier 3.4 nm
Dmax 8.9 nm
VolumePorod 134 nm3