Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Hybrid

SASDUX3 – F-actin in F-buffer at an actin concentration of 2 mg/mL

Actin, cytoplasmic 1 experimental SAS data

Sample:	Actin, cytoplasmic 1 18-mer, 751 kDa Gallus gallus protein
Buffer:	50 mM KCl, 50 mM Tris-HCl, pH 8.0, 5 mM MgCl2, 1 mM ATP, 0.1% 2-mercaptoethanol, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2013 Aug 31

Visualizing the nucleating and capped states of f-actin by Ca(2+)-gelsolin: Saxs data based structures of binary and ternary complexes. Int J Biol Macromol :134556 (2024)
Sagar A, Peddada N, Choudhary V, Mir Y, Garg R, Ashish

R_g^Guinier	13.4	nm
D_max	48.0	nm

SASDUM5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - apo form

Inosine-5'-monophosphate dehydrogenase experimental SAS data

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Feb 21

Deciphering the allosteric regulation of mycobacterial inosine-5′-monophosphate dehydrogenase Nature Communications 15(1) (2024)
Bulvas O, Knejzlík Z, Sýs J, Filimoněnko A, Čížková M, Clarová K, Rejman D, Kouba T, Pichová I

R_g^Guinier	5.3	nm
D_max	24.5	nm
Volume^Porod	952	nm³

SASDUN5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - IMP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase tetramer, 213 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

R_g^Guinier	5.0	nm
D_max	21.5	nm
Volume^Porod	471	nm³

SASDUP5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - ATP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Jan 29

R_g^Guinier	5.0	nm
D_max	14.8	nm
Volume^Porod	821	nm³

SASDUQ5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - ATP+IMP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

R_g^Guinier	5.1	nm
D_max	13.2	nm
Volume^Porod	784	nm³

SASDUR5 – Mycobacterium smegmatis Inosine-5'-monophosphate dehydrogenase (IMPDH) - GTP-bound form

Sample:	Inosine-5'-monophosphate dehydrogenase octamer, 426 kDa Mycolicibacterium smegmatis (strain … protein
Buffer:	50 mM HEPES, 200 mM KCl, 2 mM MgCl2, 0.5 mM TCEP, pH: 7.5
Experiment:	SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2024 Mar 6

R_g^Guinier	5.0	nm
D_max	14.4	nm
Volume^Porod	810	nm³

SASDVF2 – Staphylococcal extracellular adherence protein (Eap) in unbound form

Sample:	Protein map monomer, 50 kDa Staphylococcus aureus (strain … protein
Buffer:	20 mM HEPES, 140 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 Jun 3

S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases. J Biol Chem 300(9):107627 (2024)
Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV

R_g^Guinier	4.0	nm
Volume^Porod	64	nm³

SASDVG2 – Staphylococcal extracellular adherence protein (Eap) bound to human cathepsin-G

Protein mapCathepsin G experimental SAS data

Sample:	Protein map monomer, 50 kDa Staphylococcus aureus (strain … protein Cathepsin G tetramer, 101 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 140 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 Jun 3

S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases. J Biol Chem 300(9):107627 (2024)
Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV

R_g^Guinier	5.0	nm
D_max	20.2	nm
Volume^Porod	166	nm³

SASDVH2 – Staphylococcal extracellular adherence protein (Eap) bound to human neutrophil elastase

Protein mapNeutrophil elastase experimental SAS data

Sample:	Protein map monomer, 50 kDa Staphylococcus aureus (strain … protein Neutrophil elastase tetramer, 93 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 140 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 Dec 6

S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases. J Biol Chem 300(9):107627 (2024)
Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV

R_g^Guinier	4.1	nm
D_max	10.6	nm
Volume^Porod	152	nm³

SASDVK2 – Core domain of human Cathepsin-G, short truncations to both terminus (Δ22-243Δ253)

Sample:	Cathepsin G monomer, 25 kDa Homo sapiens protein
Buffer:	20 mM HEPES, 140 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2023 Jun 3

S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases. J Biol Chem 300(9):107627 (2024)
Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV

R_g^Guinier	1.9	nm
D_max	6.9	nm
Volume^Porod	27	nm³

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