Browse by MODEL: Hybrid

SASDPG3 – Receptor-type tyrosine-protein phosphatase mu extracellular domains (PTPRM-ECDs)

Receptor-type tyrosine-protein phosphatase mu experimental SAS data
DAMMIN model
Sample: Receptor-type tyrosine-protein phosphatase mu monomer, 82 kDa Homo sapiens protein
Buffer: 50 mM MES, 250 mM NaCl, 3% v/v glycerol,, pH: 6
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Dec 13
Determinants of receptor tyrosine phosphatase homophilic adhesion: structural comparison of PTPRK and PTPRM extracellular domains Journal of Biological Chemistry :102750 (2022)
Hay I, Shamin M, Caroe E, Mohammed A, Svergun D, Jeffries C, Graham S, Sharpe H, Deane J
RgGuinier 7.2 nm
Dmax 26.0 nm
VolumePorod 255 nm3

SASDP46 – Glycoside Hydrolase Family 5 endo-mannanase retrieved from Capybara gut metagenome

GH5 endo-mannanase from Capybara gut metagenome experimental SAS data
PYMOL model
Sample: GH5 endo-mannanase from Capybara gut metagenome monomer, 46 kDa metagenome protein
Buffer: 20 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at SAXS1 Beamline, Brazilian Synchrotron Light Laboratory on 2018 Oct 30
Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans. Acta Crystallogr D Struct Biol 78(Pt 11):1358-1372 (2022)
Martins MP, Morais MAB, Persinoti GF, Galinari RH, Yu L, Yoshimi Y, Passos Nunes FB, Lima TB, Barbieri SF, Silveira JLM, Lombard V, Terrapon N, Dupree P, Henrissat B, Murakami MT
RgGuinier 2.3 nm
Dmax 5.5 nm
VolumePorod 58 nm3

SASDNA9 – Acinetobacter baumannii putrescine N-hydroxylase, 1 mg/mL

L-lysine 6-monooxygenase (NADPH-requiring) experimental SAS data
ALLOSMOD model
Sample: L-lysine 6-monooxygenase (NADPH-requiring) tetramer, 214 kDa Acinetobacter baumannii MRSN … protein
Buffer: 25 mM HEPES pH 7.5, 150 mM NaCl, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2022 Apr 14
Kinetic and Structural Characterization of a Flavin-Dependent Putrescine N-Hydroxylase from Acinetobacter baumannii. Biochemistry (2022)
Lyons NS, Bogner AN, Tanner JJ, Sobrado P
RgGuinier 4.1 nm
Dmax 15.0 nm
VolumePorod 394 nm3

SASDNB9 – Acinetobacter baumannii putrescine N-hydroxylase, 3 mg/mL

L-lysine 6-monooxygenase (NADPH-requiring) experimental SAS data
ALLOSMOD model
Sample: L-lysine 6-monooxygenase (NADPH-requiring) tetramer, 214 kDa Acinetobacter baumannii MRSN … protein
Buffer: 25 mM HEPES pH 7.5, 150 mM NaCl, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2022 Apr 14
Kinetic and Structural Characterization of a Flavin-Dependent Putrescine N-Hydroxylase from Acinetobacter baumannii. Biochemistry (2022)
Lyons NS, Bogner AN, Tanner JJ, Sobrado P
RgGuinier 4.1 nm
Dmax 15.0 nm
VolumePorod 390 nm3

SASDNC9 – Acinetobacter baumannii putrescine N-hydroxylase, 5 mg/mL

L-lysine 6-monooxygenase (NADPH-requiring) experimental SAS data
ALLOSMOD model
Sample: L-lysine 6-monooxygenase (NADPH-requiring) tetramer, 214 kDa Acinetobacter baumannii MRSN … protein
Buffer: 25 mM HEPES pH 7.5, 150 mM NaCl, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2022 Apr 14
Kinetic and Structural Characterization of a Flavin-Dependent Putrescine N-Hydroxylase from Acinetobacter baumannii. Biochemistry (2022)
Lyons NS, Bogner AN, Tanner JJ, Sobrado P
RgGuinier 4.2 nm
Dmax 15.0 nm
VolumePorod 390 nm3

SASDND9 – Acinetobacter baumannii putrescine N-hydroxylase, 6 mg/mL

L-lysine 6-monooxygenase (NADPH-requiring) experimental SAS data
ALLOSMOD model
Sample: L-lysine 6-monooxygenase (NADPH-requiring) tetramer, 214 kDa Acinetobacter baumannii MRSN … protein
Buffer: 25 mM HEPES pH 7.5, 150 mM NaCl, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2022 Apr 14
Kinetic and Structural Characterization of a Flavin-Dependent Putrescine N-Hydroxylase from Acinetobacter baumannii. Biochemistry (2022)
Lyons NS, Bogner AN, Tanner JJ, Sobrado P
RgGuinier 4.2 nm
Dmax 15.4 nm
VolumePorod 390 nm3

SASDNE9 – Acinetobacter baumannii putrescine N-hydroxylase, 8 mg/mL

L-lysine 6-monooxygenase (NADPH-requiring) experimental SAS data
ALLOSMOD model
Sample: L-lysine 6-monooxygenase (NADPH-requiring) tetramer, 214 kDa Acinetobacter baumannii MRSN … protein
Buffer: 25 mM HEPES pH 7.5, 150 mM NaCl, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2022 Apr 14
Kinetic and Structural Characterization of a Flavin-Dependent Putrescine N-Hydroxylase from Acinetobacter baumannii. Biochemistry (2022)
Lyons NS, Bogner AN, Tanner JJ, Sobrado P
RgGuinier 4.2 nm
Dmax 15.5 nm
VolumePorod 390 nm3

SASDNF9 – Acinetobacter baumannii putrescine N-hydroxylase, 9 mg/mL

L-lysine 6-monooxygenase (NADPH-requiring) experimental SAS data
ALLOSMOD model
Sample: L-lysine 6-monooxygenase (NADPH-requiring) tetramer, 214 kDa Acinetobacter baumannii MRSN … protein
Buffer: 25 mM HEPES pH 7.5, 150 mM NaCl, 1 mM TCEP, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2022 Apr 14
Kinetic and Structural Characterization of a Flavin-Dependent Putrescine N-Hydroxylase from Acinetobacter baumannii. Biochemistry (2022)
Lyons NS, Bogner AN, Tanner JJ, Sobrado P
RgGuinier 4.2 nm
Dmax 15.0 nm
VolumePorod 396 nm3

SASDNW7 – Obscurin Ig domains 12/13, short at neutral pH

Obscurin Ig domains 12/13 short experimental SAS data
MULTIFOXS model
Sample: Obscurin Ig domains 12/13 short monomer, 21 kDa Homo sapiens protein
Buffer: 20 mM Tris, 50 mM NaCl, 0.35 mM NaN3, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2021 Oct 20
The N-terminus of obscurin is flexible in solution. Proteins (2022)
Mauriello GE, Moncure GE, Nowzari RA, Miller CJ, Wright NT
RgGuinier 2.5 nm
Dmax 9.0 nm
VolumePorod 25 nm3

SASDNX7 – Obscurin Ig domains 12/13, long at neutral pH

Obscurin Ig domains 12/13 long experimental SAS data
MULTIFOXS model
Sample: Obscurin Ig domains 12/13 long monomer, 22 kDa Homo sapiens protein
Buffer: 20 mM Tris, 50 mM NaCl, 0.35 mM NaN3, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2021 Oct 20
The N-terminus of obscurin is flexible in solution. Proteins (2022)
Mauriello GE, Moncure GE, Nowzari RA, Miller CJ, Wright NT
RgGuinier 2.9 nm
Dmax 10.0 nm
VolumePorod 26 nm3