Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Hybrid

SASDMQ7 – HOLO-serotransferrin at pH 5.5 in the presence of iron

Sample:	Serotransferrin monomer, 77 kDa Homo sapiens protein
Buffer:	15 mM HEPES, 20 mM NaHCO3, 50 mM NaCl, (APO Buffer), pH: 5.5
Experiment:	SAXS data collected at BM29, ESRF on 2021 Apr 7

X-ray Characterization of Conformational Changes of Human Apo- and Holo-Transferrin International Journal of Molecular Sciences 22(24):13392 (2021)
Campos-Escamilla C, Siliqi D, Gonzalez-Ramirez L, Lopez-Sanchez C, Gavira J, Moreno A

R_g^Guinier	3.3	nm
D_max	14.6	nm
Volume^Porod	107	nm³

SASDMR7 – HOLO-serotransferrin at pH 7.0 in the presence of iron

Sample:	Serotransferrin monomer, 77 kDa Homo sapiens protein
Buffer:	15 mM HEPES, 20 mM NaHCO3, 50 mM NaCl (APO Buffer), pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2021 Apr 7

R_g^Guinier	3.2	nm
D_max	13.5	nm
Volume^Porod	103	nm³

SASDMS7 – HOLO-serotransferrin at pH 8.0 in the presence of iron

Sample:	Serotransferrin monomer, 77 kDa Homo sapiens protein
Buffer:	15 mM HEPES, 20 mM NaHCO3, 50 mM NaCl (Buffer APO-Tf-1), pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2021 Apr 7

R_g^Guinier	3.2	nm
D_max	13.1	nm
Volume^Porod	106	nm³

SASDKV7 – CCP2-SP domains of the complement C1r subcomponent

Complement C1r subcomponent experimental SAS data

Sample:	Complement C1r subcomponent monomer, 38 kDa Homo sapiens protein
Buffer:	10 mM HEPES, 140 mM NaCl, pH: 7.3
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Sep 24

A Structural Basis for Inhibition of the Complement Initiator Protease C1r by Lyme Disease Spirochetes. J Immunol 207(11):2856-2867 (2021)
Garrigues RJ, Powell-Pierce AD, Hammel M, Skare JT, Garcia BL

R_g^Guinier	2.4	nm
D_max	7.9	nm
Volume^Porod	63	nm³

SASDKW7 – Complement inhibitory domain of the Borrelia burgdorferi fibronectin-binding protein BBK32

Fibronectin-binding protein BBK32 experimental SAS data

Sample:	Fibronectin-binding protein BBK32 monomer, 17 kDa Borreliella burgdorferi B31 protein
Buffer:	10 mM HEPES, 140 mM NaCl, pH: 7.3
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2020 Sep 24

R_g^Guinier	2.1	nm
D_max	7.6	nm
Volume^Porod	34	nm³

SASDKX7 – CCP2-SP domains of the complement C1r subcomponent bound to the complement inhibitory domain of the Borrelia burgdorferi fibronectin-binding protein BBK32

Fibronectin-binding protein BBK32Complement C1r subcomponent experimental SAS data

Sample:	Fibronectin-binding protein BBK32 monomer, 17 kDa Borrelia burgdorferi (strain … protein Complement C1r subcomponent monomer, 38 kDa Homo sapiens protein
Buffer:	10 mM HEPES, 140 mM NaCl, pH: 7.3
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Sep 24

R_g^Guinier	2.8	nm
D_max	8.6	nm
Volume^Porod	75	nm³

SASDLT2 – 6D11 IgG monoclonal antibody

Anti-prion protein monoclonal IgG2a 6D11 experimental SAS data

Sample:	Anti-prion protein monoclonal IgG2a 6D11 monomer, 145 kDa Mus musculus protein
Buffer:	phosphate buffered saline, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Dec 15

Ligands binding to the prion protein induce its proteolytic release with therapeutic potential in neurodegenerative proteinopathies. Sci Adv 7(48):eabj1826 (2021)
Linsenmeier L, Mohammadi B, Shafiq M, Frontzek K, Bär J, Shrivastava AN, Damme M, Song F, Schwarz A, Da Vela S, Massignan T, Jung S, Correia A, Schmitz M, Puig B, Hornemann S, Zerr I, Tatzelt J, Biasini E, Saftig P, Schweizer M, Svergun D, Amin L, Mazzola F, Varani L, Thapa S, Gilch S, Schätzl H, Harris DA, Triller A, Mikhaylova M, Aguzzi A, Altmeppen HC, Glatzel M

R_g^Guinier	5.1	nm
D_max	17.4	nm
Volume^Porod	330	nm³

SASDLU2 – 2:1 complex between anti prion protein monoclonal IgG 6D11 and recombinant murine prion protein

Major prion proteinAnti-prion protein monoclonal IgG2a 6D11 experimental SAS data

Sample:	Major prion protein monomer, 23 kDa Mus musculus protein Anti-prion protein monoclonal IgG2a 6D11 monomer, 145 kDa Mus musculus protein
Buffer:	phosphate buffered saline, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Dec 15

R_g^Guinier	8.1	nm
D_max	24.8	nm
Volume^Porod	710	nm³

SASDEX9 – Class II pyruvate aldolase (HpcH/HpaI aldolase), wild-type hexamer in HEPES isolated using SEC-SAXS

HpcH/HpaI aldolase experimental SAS data

Sample:	HpcH/HpaI aldolase hexamer, 165 kDa Rhizorhabdus wittichii RW1 protein
Buffer:	20 mM HEPES,, pH: 7.5
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2018 Nov 23

EFAMIX , a tool to decompose inline chromatography SAXS data from partially overlapping components Protein Science (2021)
Konarev P, Graewert M, Jeffries C, Fukuda M, Cheremnykh T, Volkov V, Svergun D

R_g^Guinier	3.3	nm
D_max	9.4	nm
Volume^Porod	233	nm³

SASDMP2 – Mouse Kirrel3 ectodomain

Kin of IRRE-like protein 3 experimental SAS data

Sample:	Kin of IRRE-like protein 3 dimer, 106 kDa Mus musculus protein
Buffer:	10 mM HEPES pH 7.2, 150 mM NaCl, pH: 7.2
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Aug 3

Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors. Cell Rep 37(5):109940 (2021)
Wang J, Vaddadi N, Pak JS, Park Y, Quilez S, Roman CA, Dumontier E, Thornton JW, Cloutier JF, Özkan E

R_g^Guinier	9.3	nm
D_max	34.5	nm

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