Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Hybrid

SASDLQ4 – Deoxyribose-phosphate aldolase, DeoC

Deoxyribose-phosphate aldolase experimental SAS data

Sample:	Deoxyribose-phosphate aldolase, 28 kDa Escherichia coli (strain … protein
Buffer:	50 mM HEPES, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Oct 1

Protein quaternary structures in solution are a mixture of multiple forms Chemical Science 13(39):11680-11695 (2022)
Marciano S, Dey D, Listov D, Fleishman S, Sonn-Segev A, Mertens H, Busch F, Kim Y, Harvey S, Wysocki V, Schreiber G

R_g^Guinier	2.6	nm
D_max	8.0	nm
Volume^Porod	61	nm³

SASDLR4 – 3-oxoacyl-[acyl-carrier-protein] reductase, FabG

3-oxoacyl-[acyl-carrier-protein] reductase FabG experimental SAS data

Sample:	3-oxoacyl-[acyl-carrier-protein] reductase FabG, 26 kDa Escherichia coli (strain … protein
Buffer:	50 mM HEPES, pH: 7.4
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Oct 1

R_g^Guinier	3.6	nm
D_max	10.6	nm
Volume^Porod	212	nm³

SASDMT3 – NAD Kinase

Sample:	NAD kinase, 33 kDa Escherichia coli (strain … protein
Buffer:	50 mM HEPES, pH: 7.2
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Oct 2

R_g^Guinier	4.0	nm
D_max	12.5	nm
Volume^Porod	260	nm³

SASDNF7 – CK2α (Casein kinase II subunit alpha)

Casein kinase II subunit alpha experimental SAS data

Sample:	Casein kinase II subunit alpha monomer, 39 kDa Homo sapiens protein
Buffer:	25 mM Tris, 500 mM NaCl, pH: 8.5
Experiment:	SAXS data collected at BM29, ESRF on 2021 Oct 10

Mechanism of CK2 Inhibition by a Ruthenium-Based Polyoxometalate. Front Mol Biosci 9:906390 (2022)
Fabbian S, Giachin G, Bellanda M, Borgo C, Ruzzene M, Spuri G, Campofelice A, Veneziano L, Bonchio M, Carraro M, Battistutta R

R_g^Guinier	2.2	nm
D_max	6.7	nm
Volume^Porod	59	nm³

SASDNG7 – CK2α (Casein kinase II subunit alpha) dimer bound to ruthenium-based polyoxometalate (Ru4POM)

Sample:	Casein kinase II subunit alpha dimer, 78 kDa Homo sapiens protein
Buffer:	25 mM Tris, 500 mM NaCl, pH: 8.5
Experiment:	SAXS data collected at BM29, ESRF on 2021 Oct 10

R_g^Guinier	3.0	nm
D_max	11.8	nm
Volume^Porod	122	nm³

SASDMS6 – Non-POU domain-containing octamer-binding protein (NONO homodimer)

Non-POU domain-containing octamer-binding protein experimental SAS data

Sample:	Non-POU domain-containing octamer-binding protein dimer, 60 kDa Homo sapiens protein
Buffer:	20 mM Tris-Cl (pH 7.5), 250 mM KCl, 50 mM L-proline, 0.5 mM EDTA, pH: 7.5
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Apr 28

Structural basis of dimerization and nucleic acid binding of human DBHS proteins NONO and PSPC1. Nucleic Acids Res (2021)
Knott GJ, Chong YS, Passon DM, Liang XH, Deplazes E, Conte MR, Marshall AC, Lee M, Fox AH, Bond CS

R_g^Guinier	2.8	nm
D_max	9.5	nm
Volume^Porod	96	nm³

SASDMT6 – Non-POU domain-containing octamer-binding protein (NONO homodimer) bound to an antisense oligonucleotide

Non-POU domain-containing octamer-binding protein5-10-5 gapmer phosphorothioate antisense oligonucleotide tetramer experimental SAS data

Sample:	Non-POU domain-containing octamer-binding protein dimer, 60 kDa Homo sapiens protein 5-10-5 gapmer phosphorothioate antisense oligonucleotide tetramer tetramer, 28 kDa
Buffer:	20 mM Tris-Cl (pH 7.5), 250 mM KCl, 50 mM L-proline, 0.5 mM EDTA, pH: 7.5
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Apr 28

R_g^Guinier	3.9	nm
D_max	18.4	nm
Volume^Porod	153	nm³

SASDMM7 – Apo-serotransferrin at pH 5.5

Sample:	Serotransferrin monomer, 77 kDa Homo sapiens protein
Buffer:	15 mM HEPES, 20 mM NaHCO3, 50 mM NaCl, (APO Buffer), pH: 5.5
Experiment:	SAXS data collected at BM29, ESRF on 2021 Apr 7

X-ray Characterization of Conformational Changes of Human Apo- and Holo-Transferrin International Journal of Molecular Sciences 22(24):13392 (2021)
Campos-Escamilla C, Siliqi D, Gonzalez-Ramirez L, Lopez-Sanchez C, Gavira J, Moreno A

R_g^Guinier	3.1	nm
D_max	9.8	nm
Volume^Porod	106	nm³

SASDMN7 – Apo-serotransferrin at pH 7.0

Sample:	Serotransferrin monomer, 77 kDa Homo sapiens protein
Buffer:	15 mM HEPES, 20 mM NaHCO3, 50 mM NaCl (APO Buffer), pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2021 Apr 7

R_g^Guinier	3.1	nm
D_max	9.6	nm
Volume^Porod	106	nm³

SASDMP7 – Apo-serotransferrin at pH 8.0

Sample:	Serotransferrin monomer, 77 kDa Homo sapiens protein
Buffer:	15 mM HEPES, 20 mM NaHCO3, 50 mM NaCl (Buffer APO-Tf-1), pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2021 Apr 7

R_g^Guinier	3.1	nm
D_max	9.4	nm
Volume^Porod	106	nm³

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