Browse by MODEL: No model

SASDUD9 – Apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2

apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2 experimental SAS data
apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2 Kratky plot
Sample: Apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2 monomer, 8 kDa SARS-Coronavirus-2 Delta RNA
Buffer: 50 mM Bis-Tris, 25 mM NaCl, pH: 6.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2022 Nov 30
Structural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach. Nucleic Acids Res 53(12) (2025)
Wirtz Martin MA, Makowski JA, Matzel T, Kensinger AH, Herr A, Richter C, Jonker HRA, Wacker A, Evanseck JD, Schwalbe H
RgGuinier 1.5 nm

SASDWL5 – I-RNA, an A-to-I hyper-edited 20mer dsRNA

I-RNA, Top-strandI-RNA, Bottom-strand experimental SAS data
I-RNA, Top-strand I-RNA, Bottom-strand Kratky plot
Sample: I-RNA, Top-strand monomer, 7 kDa RNA
I-RNA, Bottom-strand monomer, 7 kDa RNA
Buffer: 25 mM sodium phosphate 25 mM sodium chloride, pH: 6.4
Experiment: SAXS data collected at BM29, ESRF on 2022 Nov 9
Unique conformational dynamics and protein recognition of A-to-I hyper-edited dsRNA. Nucleic Acids Res 53(12) (2025)
Müller-Hermes C, Piomponi V, Hilber S, Asami S, Kreutz C, Bussi G, Sattler M
RgGuinier 2.0 nm
Dmax 6.9 nm
VolumePorod 17 nm3

SASDWM5 – A-RNA, non-edited 20mer dsRNA

A-RNA, Top-StrandA-RNA, Bottom-Strand experimental SAS data
A-RNA, Top-Strand A-RNA, Bottom-Strand Kratky plot
Sample: A-RNA, Top-Strand monomer, 6 kDa RNA
A-RNA, Bottom-Strand monomer, 6 kDa RNA
Buffer: 25 mM sodium phosphate 25 mM sodium chloride, pH: 6.4
Experiment: SAXS data collected at BM29, ESRF on 2022 Nov 9
Unique conformational dynamics and protein recognition of A-to-I hyper-edited dsRNA. Nucleic Acids Res 53(12) (2025)
Müller-Hermes C, Piomponi V, Hilber S, Asami S, Kreutz C, Bussi G, Sattler M
RgGuinier 1.8 nm
Dmax 6.2 nm
VolumePorod 17 nm3

SASDXB3 – Apical stem loop of stem loop 2 motif in Delta variant of SARS-CoV-2 (s2m Delta_short)

apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2 experimental SAS data
apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2 Kratky plot
Sample: Apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2 monomer, 8 kDa SARS-Coronavirus-2 Delta RNA
Buffer: 50 mM Bis-Tris, 25 mM NaCl, pH: 6.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2022 Nov 30
Structural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach. Nucleic Acids Res 53(12) (2025)
Wirtz Martin MA, Makowski JA, Matzel T, Kensinger AH, Herr A, Richter C, Jonker HRA, Wacker A, Evanseck JD, Schwalbe H
RgGuinier 1.4 nm

SASDXK3 – Alkaline serine protease (36 kDa peptidase core domain, StmPr1)

Alkaline serine protease experimental SAS data
Alkaline serine protease Kratky plot
Sample: Alkaline serine protease monomer, 36 kDa Stenotrophomonas maltophilia protein
Buffer: 20 mM Tris, 150 mM NaCl, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Jun 10
Unveiling the structure, function and dynamics of StmPr1 in Stenotrophomonas maltophilia virulence. Sci Rep 15(1):20193 (2025)
Sommer M, Negm A, Outzen L, Windhorst S, Gabdulkhakov A, Weber W, Betzel C
RgGuinier 1.9 nm
Dmax 5.5 nm
VolumePorod 44 nm3

SASDXL3 – Alkaline serine protease (47 kDa peptidase core and C-terminal domains, StmPr1)

Alkaline serine protease (Δ1-150) experimental SAS data
Alkaline serine protease (Δ1-150) Kratky plot
Sample: Alkaline serine protease (Δ1-150) monomer, 47 kDa Stenotrophomonas maltophilia protein
Buffer: 20 mM Tris, 150 mM NaCl, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Nov 25
Unveiling the structure, function and dynamics of StmPr1 in Stenotrophomonas maltophilia virulence. Sci Rep 15(1):20193 (2025)
Sommer M, Negm A, Outzen L, Windhorst S, Gabdulkhakov A, Weber W, Betzel C
RgGuinier 2.9 nm
Dmax 10.0 nm
VolumePorod 112 nm3

SASDSW5 – B cell lymphoma 7 protein family member A (BCL7A)

Isoform 2 of B-cell CLL/lymphoma 7 protein family member A experimental SAS data
Isoform 2 of B-cell CLL/lymphoma 7 protein family member A Kratky plot
Sample: Isoform 2 of B-cell CLL/lymphoma 7 protein family member A monomer, 25 kDa Homo sapiens protein
Buffer: 20 mM Tris-HCl , 50 mM KCl, 1 mM DTT, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Dec 2
BCL7 proteins, novel subunits of the mammalian SWI/SNF complex, bind the nucleosome core particle
Asgar Abbas kazrani
RgGuinier 4.8 nm
Dmax 28.8 nm

SASDSR9 – SARS-CoV-2 N-protein (N1-245; residues 1-245): 38.2 µM

Nucleoprotein experimental SAS data
Nucleoprotein Kratky plot
Sample: Nucleoprotein monomer, 27 kDa Severe acute respiratory … protein
Buffer: 100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2022 May 13
Dynamic ensembles of SARS-CoV-2 N-protein reveal head-to-head coiled-coil-driven oligomerization and phase separation. Nucleic Acids Res 53(11) (2025)
Hernandez G, Martins ML, Fernandes NP, Veloso T, Lopes J, Gomes T, Cordeiro TN
RgGuinier 3.3 nm
Dmax 15.5 nm
VolumePorod 56 nm3

SASDSS9 – SARS-CoV-2 N-protein (N1-245, residues 1-245): 76.4 µM

Nucleoprotein experimental SAS data
Nucleoprotein Kratky plot
Sample: Nucleoprotein dimer, 55 kDa Severe acute respiratory … protein
Buffer: 100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2022 May 13
Dynamic ensembles of SARS-CoV-2 N-protein reveal head-to-head coiled-coil-driven oligomerization and phase separation. Nucleic Acids Res 53(11) (2025)
Hernandez G, Martins ML, Fernandes NP, Veloso T, Lopes J, Gomes T, Cordeiro TN
RgGuinier 4.0 nm
Dmax 18.0 nm
VolumePorod 67 nm3

SASDST9 – SARS-CoV-2 N-protein (N1-245; residues 1-245): 294.7 µM

Nucleoprotein experimental SAS data
Nucleoprotein Kratky plot
Sample: Nucleoprotein tetramer, 110 kDa Severe acute respiratory … protein
Buffer: 100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2022 May 13
Dynamic ensembles of SARS-CoV-2 N-protein reveal head-to-head coiled-coil-driven oligomerization and phase separation. Nucleic Acids Res 53(11) (2025)
Hernandez G, Martins ML, Fernandes NP, Veloso T, Lopes J, Gomes T, Cordeiro TN
RgGuinier 5.2 nm
Dmax 22.0 nm
VolumePorod 117 nm3