Small Angle Scattering Biological Data Bank SASBDB

Browse by MACROMOLECULE type: nucleic acid

SASDCD5 – Light encoded DNA biosensor: e14ABC DNA

Sample:	E14ABC monomer, 106 kDa DNA
Buffer:	154 mM NaCl, pH: 8.3
Experiment:	SAXS data collected at BM29, ESRF on 2016 Jun 16

Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV

R_g^Guinier	4.7	nm
D_max	25.0	nm
Volume^Porod	152	nm³

SASDCE5 – Light encoded DNA biosensor: e13A DNA

Sample:	E13A monomer, 17 kDa DNA
Buffer:	154 mM NaCl, pH: 8.3
Experiment:	SAXS data collected at BM29, ESRF on 2013 Nov 22

R_g^Guinier	2.3	nm
D_max	8.0	nm
Volume^Porod	24	nm³

SASDCF5 – Light encoded DNA biosensor: e13B DNA

Sample:	E13B monomer, 10 kDa DNA
Buffer:	154 mM NaCl, pH: 8.3
Experiment:	SAXS data collected at BM29, ESRF on 2013 Nov 22

R_g^Guinier	1.8	nm
D_max	7.0	nm
Volume^Porod	13	nm³

SASDCG5 – Light encoded DNA biosensor: e13C DNA

Sample:	E13C monomer, 6 kDa DNA
Buffer:	154 mM NaCl, pH: 8.3
Experiment:	SAXS data collected at BM29, ESRF on 2013 Nov 22

R_g^Guinier	1.3	nm
D_max	5.0	nm
Volume^Porod	8	nm³

SASDCH5 – Light encoded DNA biosensor: e13AB DNA

Sample:	E13AB monomer, 79 kDa DNA
Buffer:	154 mM NaCl, pH: 8.3
Experiment:	SAXS data collected at BM29, ESRF on 2013 Nov 22

R_g^Guinier	4.7	nm
D_max	20.0	nm
Volume^Porod	103	nm³

SASDCJ5 – Light encoded DNA biosensor: e13ABC DNA

Sample:	E13ABC monomer, 42 kDa DNA
Buffer:	154 mM NaCl, pH: 8.3
Experiment:	SAXS data collected at BM29, ESRF on 2013 Nov 22

R_g^Guinier	3.9	nm
D_max	18.0	nm
Volume^Porod	59	nm³

SASDCK5 – Light encoded DNA biosensor: e13Ae14Be13C DNA

Sample:	E13Ae14Be13C monomer, 40 kDa DNA
Buffer:	154 mM NaCl, pH: 8.3
Experiment:	SAXS data collected at BM29, ESRF on 2016 Jun 16

R_g^Guinier	3.7	nm
D_max	18.0	nm
Volume^Porod	65	nm³

SASDCL5 – Light encoded DNA biosensor: e14Ae13Be14C DNA

Sample:	E14Ae13Be14C monomer, 31 kDa DNA
Buffer:	154 mM NaCl, pH: 8.3
Experiment:	SAXS data collected at BM29, ESRF on 2016 Jun 16

R_g^Guinier	3.4	nm
D_max	14.0	nm
Volume^Porod	42	nm³

SASDCB3 – Methylated C-terminal ZBTB38 binding sequence (mCZ38BS)

methylated C-terminal ZBTB38 binding sequence experimental SAS data

Sample:	Methylated C-terminal ZBTB38 binding sequence monomer, 17 kDa DNA
Buffer:	10 mM Tris, 1 mM tris(2-carboxy-ethyl)phosphine (TCEP), 0.05% NaN3, 10% D2O, pH: 6.8
Experiment:	SAXS data collected at Anton Paar SAXSess, Department of Chemistry, University of Utah on 2016 Oct 27

The C-Terminal Zinc Fingers of ZBTB38 are Novel Selective Readers of DNA Methylation. J Mol Biol 430(3):258-271 (2018)
Pozner A, Hudson NO, Trewhella J, Terooatea TW, Miller SA, Buck-Koehntop BA

R_g^Guinier	2.5	nm
D_max	9.2	nm
Volume^Porod	23	nm³

SASDB89 – Telomeric DNA duplex

telomere DNA duplex experimental SAS data

Sample:	Telomere DNA duplex monomer, 11 kDa DNA
Buffer:	20 mM Tris-HCl, 50 mM LiCl, pH: 7.5
Experiment:	SAXS data collected at Rigaku BioSAXS-1000, CEITEC on 2016 May 3

Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it. Nucleic Acids Res 45(21):12170-12180 (2017)
Necasová I, Janoušková E, Klumpler T, Hofr C

R_g^Guinier	1.6	nm
D_max	5.7	nm
Volume^Porod	12	nm³

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