Browse by MACROMOLECULE type: protein

SASDDT2 – EspG3 chaperone from Mycobacterium tuberculosis

EspG3 chaperone from Mycobacterium tuberculosis experimental SAS data
EspG3 chaperone from Mycobacterium tuberculosis Kratky plot
Sample: EspG3 chaperone from Mycobacterium tuberculosis, 34 kDa Mycobacterium tuberculosis protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2014 Mar 17
Structural variability of EspG chaperones from mycobacterial ESX-1, ESX-3 and ESX-5 type VII secretion systems (2018)
Tuukkanen A, Freire D, Chan S, Arbing M, Reed R, Evans T, Zenkeviciutė G, Kim J, Kahng S, Sawaya M, Chaton C, Wilmanns M, Eisenberg D, Parret A, Korotkov K
RgGuinier 2.5 nm
Dmax 9.0 nm

SASDDU2 – EspG3 chaperone from Mycobacterium smegmatis (Sel-Met labelled)

EspG3 chaperone from Mycobacterium smegmatis experimental SAS data
EspG3 chaperone from Mycobacterium smegmatis Kratky plot
Sample: EspG3 chaperone from Mycobacterium smegmatis monomer, 32 kDa Mycobacterium smegmatis protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2014 Mar 17
Structural variability of EspG chaperones from mycobacterial ESX-1, ESX-3 and ESX-5 type VII secretion systems (2018)
Tuukkanen A, Freire D, Chan S, Arbing M, Reed R, Evans T, Zenkeviciutė G, Kim J, Kahng S, Sawaya M, Chaton C, Wilmanns M, Eisenberg D, Parret A, Korotkov K
RgGuinier 2.6 nm
Dmax 9.2 nm

SASDDV2 – EspG5 chaperone from Mycobacterium tuberculosis

EspG5 chaperone from Mycobacterium tuberculosis experimental SAS data
EspG5 chaperone from Mycobacterium tuberculosis Rg histogram
Sample: EspG5 chaperone from Mycobacterium tuberculosis monomer, 32 kDa Mycobacterium tuberculosis protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jan 12
Structural variability of EspG chaperones from mycobacterial ESX-1, ESX-3 and ESX-5 type VII secretion systems (2018)
Tuukkanen A, Freire D, Chan S, Arbing M, Reed R, Evans T, Zenkeviciutė G, Kim J, Kahng S, Sawaya M, Chaton C, Wilmanns M, Eisenberg D, Parret A, Korotkov K
RgGuinier 2.4 nm
Dmax 8.0 nm

SASDDW2 – EspG5-PE25/PPE41 complex from M. tuberculosis

EspG5 chaperone from Mycobacterium tuberculosisPE25 from Mycobacterium tuberculosisPPE41 from Mycobacterium tuberculosis experimental SAS data
Sample: EspG5 chaperone from Mycobacterium tuberculosis monomer, 32 kDa Mycobacterium tuberculosis protein
PE25 from Mycobacterium tuberculosis monomer, 11 kDa Mycobacterium tuberculosis protein
PPE41 from Mycobacterium tuberculosis monomer, 22 kDa Mycobacterium tuberculosis protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Feb 10
Structural variability of EspG chaperones from mycobacterial ESX-1, ESX-3 and ESX-5 type VII secretion systems (2018)
Tuukkanen A, Freire D, Chan S, Arbing M, Reed R, Evans T, Zenkeviciutė G, Kim J, Kahng S, Sawaya M, Chaton C, Wilmanns M, Eisenberg D, Parret A, Korotkov K
RgGuinier 4.0 nm
Dmax 13.0 nm

SASDDX2 – EspG3-PE5/PPE4 complex from M. tuberculosis

EspG3 chaperone from Mycobacterium tuberculosisPE5 from Mycobacterium tuberculosisPPE4 from Mycobacterium tuberculosis experimental SAS data
Sample: EspG3 chaperone from Mycobacterium tuberculosis, 34 kDa Mycobacterium tuberculosis protein
PE5 from Mycobacterium tuberculosis monomer, 10 kDa Mycobacterium tuberculosis protein
PPE4 from Mycobacterium tuberculosis monomer, 52 kDa Mycobacterium tuberculosis protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2015 Jun 15
Structural variability of EspG chaperones from mycobacterial ESX-1, ESX-3 and ESX-5 type VII secretion systems (2018)
Tuukkanen A, Freire D, Chan S, Arbing M, Reed R, Evans T, Zenkeviciutė G, Kim J, Kahng S, Sawaya M, Chaton C, Wilmanns M, Eisenberg D, Parret A, Korotkov K
RgGuinier 4.0 nm
Dmax 14.2 nm

SASDCG7 – Lys63-linked diubiquitin at pH7.4

Polyubiquitin-C experimental SAS data
Polyubiquitin-C Kratky plot
Sample: Polyubiquitin-C dimer, 17 kDa Homo sapiens protein
Buffer: 20mM HEPES, 150mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL19U2, Shanghai Synchrotron Radiation Facility (SSRF) on 2016 Mar 24
Characterizing Protein Dynamics with Integrative Use of Bulk and Single-Molecule Techniques. Biochemistry 57(3):305-313 (2018)
Liu Z, Gong Z, Cao Y, Ding YH, Dong MQ, Lu YB, Zhang WP, Tang C
RgGuinier 2.0 nm
Dmax 7.0 nm
VolumePorod 22 nm3

SASDCM9 – Ammonium transporter Ks-Amt5

ammonium sensor/transducer experimental SAS data
CORAL model
Sample: Ammonium sensor/transducer trimer, 227 kDa Candidatus Kuenenia stuttgartiensis protein
Buffer: 20 mM Tris/HCl,100 mM NaCl, 5%(w/v) glycerol, 0.09%(w/v) CYMAL-5, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Mar 1
Signaling ammonium across membranes through an ammonium sensor histidine kinase. Nat Commun 9(1):164 (2018)
Pflüger T, Hernández CF, Lewe P, Frank F, Mertens H, Svergun D, Baumstark MW, Lunin VY, Jetten MSM, Andrade SLA
RgGuinier 4.8 nm
Dmax 17.0 nm
VolumePorod 511 nm3

SASDCN9 – Ks-Amt5-HK (apo)

Ammonium transporter histidine kinase domain experimental SAS data
Ammonium transporter histidine kinase domain Kratky plot
Sample: Ammonium transporter histidine kinase domain monomer, 30 kDa Candidatus Kuenenia stuttgartiensis protein
Buffer: 20 mM Tris/HCl,100 mM NaCl, 5%(w/v) glycerol, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Mar 2
Signaling ammonium across membranes through an ammonium sensor histidine kinase. Nat Commun 9(1):164 (2018)
Pflüger T, Hernández CF, Lewe P, Frank F, Mertens H, Svergun D, Baumstark MW, Lunin VY, Jetten MSM, Andrade SLA
RgGuinier 2.7 nm
Dmax 10.0 nm
VolumePorod 71 nm3

SASDCP9 – Ks-Amt5-HK (+10uM APPCP)

Ammonium transporter histidine kinase domain experimental SAS data
Ammonium transporter histidine kinase domain Kratky plot
Sample: Ammonium transporter histidine kinase domain monomer, 30 kDa Candidatus Kuenenia stuttgartiensis protein
Buffer: 20 mM Tris/HCl,100 mM NaCl, 5%(w/v) glycerol, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Mar 2
Signaling ammonium across membranes through an ammonium sensor histidine kinase. Nat Commun 9(1):164 (2018)
Pflüger T, Hernández CF, Lewe P, Frank F, Mertens H, Svergun D, Baumstark MW, Lunin VY, Jetten MSM, Andrade SLA
RgGuinier 2.3 nm
Dmax 8.0 nm
VolumePorod 53 nm3

SASDCQ9 – Ks-Amt5-HK (+10uM ATP)

Ammonium transporter histidine kinase domain experimental SAS data
Ammonium transporter histidine kinase domain Kratky plot
Sample: Ammonium transporter histidine kinase domain monomer, 30 kDa Candidatus Kuenenia stuttgartiensis protein
Buffer: 20 mM Tris/HCl,100 mM NaCl, 5%(w/v) glycerol, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Mar 2
Signaling ammonium across membranes through an ammonium sensor histidine kinase. Nat Commun 9(1):164 (2018)
Pflüger T, Hernández CF, Lewe P, Frank F, Mertens H, Svergun D, Baumstark MW, Lunin VY, Jetten MSM, Andrade SLA
RgGuinier 2.2 nm
Dmax 7.7 nm
VolumePorod 53 nm3