Browse by ORGANISM: other species

SASDCC5 – Light encoded DNA biosensor: e14AB DNA

e14AB experimental SAS data
DAMFILT model
Sample: E14AB monomer, 93 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 5.4 nm
Dmax 24.7 nm

SASDCD5 – Light encoded DNA biosensor: e14ABC DNA

e14ABC experimental SAS data
DAMFILT model
Sample: E14ABC monomer, 106 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 4.7 nm
Dmax 25.0 nm
VolumePorod 152 nm3

SASDCE5 – Light encoded DNA biosensor: e13A DNA

e13A experimental SAS data
DAMFILT model
Sample: E13A monomer, 17 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 2.3 nm
Dmax 8.0 nm
VolumePorod 24 nm3

SASDCF5 – Light encoded DNA biosensor: e13B DNA

e13B experimental SAS data
DAMFILT model
Sample: E13B monomer, 10 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 1.8 nm
Dmax 7.0 nm
VolumePorod 13 nm3

SASDCG5 – Light encoded DNA biosensor: e13C DNA

e13C experimental SAS data
DAMFILT model
Sample: E13C monomer, 6 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 1.3 nm
Dmax 5.0 nm
VolumePorod 8 nm3

SASDCH5 – Light encoded DNA biosensor: e13AB DNA

e13AB experimental SAS data
DAMFILT model
Sample: E13AB monomer, 79 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 4.7 nm
Dmax 20.0 nm
VolumePorod 103 nm3

SASDCJ5 – Light encoded DNA biosensor: e13ABC DNA

e13ABC experimental SAS data
DAMFILT model
Sample: E13ABC monomer, 42 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 3.9 nm
Dmax 18.0 nm
VolumePorod 59 nm3

SASDCK5 – Light encoded DNA biosensor: e13Ae14Be13C DNA

e13Ae14Be13C experimental SAS data
DAMFILT model
Sample: E13Ae14Be13C monomer, 40 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 3.7 nm
Dmax 18.0 nm
VolumePorod 65 nm3

SASDCL5 – Light encoded DNA biosensor: e14Ae13Be14C DNA

e14Ae13Be14C experimental SAS data
DAMFILT model
Sample: E14Ae13Be14C monomer, 31 kDa DNA
Buffer: 154 mM NaCl, pH: 8.3
Experiment: SAXS data collected at BM29, ESRF on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor. ACS Chem Biol 13(5):1235-1242 (2018)
Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV
RgGuinier 3.4 nm
Dmax 14.0 nm
VolumePorod 42 nm3

SASDDT5 – Ribonucleoprotein complex of nonstructural protein sigma NS bound to 20mer RNA (NS-RNP20)

Nonstructural protein sigma NS20mer RNA (unstructured) experimental SAS data
Nonstructural protein sigma NS 20mer RNA (unstructured) Kratky plot
Sample: Nonstructural protein sigma NS octamer, 325 kDa Avian orthoreovirus protein
20mer RNA (unstructured) dimer, 13 kDa RNA
Buffer: 25 mM HEPES, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2017 Feb 25
Stability of local secondary structure determines selectivity of viral RNA chaperones. Nucleic Acids Res (2018)
Bravo JPK, Borodavka A, Barth A, Calabrese AN, Mojzes P, Cockburn JJB, Lamb DC, Tuma R
RgGuinier 7.8 nm
Dmax 38.0 nm
VolumePorod 964 nm3