Browse by ORGANISM: other species

SASDBJ7 – Pomacea maculata perivitellin 1

Pomacea maculata perivitellin 1 experimental SAS data
DAMMIF model
Sample: Pomacea maculata perivitellin 1 dodecamer, 278 kDa Pomacea maculata protein
Buffer: 100 mM Phosphate Buffer, pH: 7.4
Experiment: SAXS data collected at SAXS2 Beamline, Brazilian Synchrotron Light Laboratory on 2015 Mar 26
Convergent evolution of plant and animal embryo defences by hyperstable non-digestible storage proteins. Sci Rep 7(1):15848 (2017)
Pasquevich MY, Dreon MS, Qiu JW, Mu H, Heras H
RgGuinier 4.2 nm
Dmax 14.3 nm
VolumePorod 537 nm3

SASDCN5 – Vaccinia virus DNA polymerase

DNA polymerase E9 experimental SAS data
PYMOL model
Sample: DNA polymerase E9 monomer, 117 kDa Vaccinia virus protein
Buffer: 20 mM Tris HCl, 100 mM NaCl, 4 mM DTT, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2014 Nov 27
The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding. Nat Commun 8(1):1455 (2017)
Tarbouriech N, Ducournau C, Hutin S, Mas PJ, Man P, Forest E, Hart DJ, Peyrefitte CN, Burmeister WP, Iseni F
RgGuinier 3.9 nm
Dmax 12.0 nm
VolumePorod 202 nm3

SASDCP5 – Vaccinia virus DNA polymerase processivity factor component A20 (C-terminal fragment)

DNA polymerase processivity factor component A20 C-ter fragment experimental SAS data
DAMMIF model
Sample: DNA polymerase processivity factor component A20 C-ter fragment monomer, 17 kDa Vaccinia virus protein
Buffer: 25 mM Tris-HCl, 300 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Feb 5
The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding. Nat Commun 8(1):1455 (2017)
Tarbouriech N, Ducournau C, Hutin S, Mas PJ, Man P, Forest E, Hart DJ, Peyrefitte CN, Burmeister WP, Iseni F
RgGuinier 2.2 nm
Dmax 7.4 nm
VolumePorod 31 nm3

SASDC82 – Rab family protein CtRoco nucleotide free

Rab family protein experimental SAS data
DAMMIN model
Sample: Rab family protein dimer, 254 kDa Chlorobaculum tepidum protein
Buffer: 20 mM HEPES 150 mM NaCl 5 mM MgCl2 5% Glycerol 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2015 Feb 16
A homologue of the Parkinson's disease-associated protein LRRK2 undergoes a monomer-dimer transition during GTP turnover. Nat Commun 8(1):1008 (2017)
Deyaert E, Wauters L, Guaitoli G, Konijnenberg A, Leemans M, Terheyden S, Petrovic A, Gallardo R, Nederveen-Schippers LM, Athanasopoulos PS, Pots H, Van Haastert PJM, Sobott F, Gloeckner CJ, Efremov R, Kortholt A, Versées W
RgGuinier 5.0 nm
Dmax 18.4 nm
VolumePorod 440 nm3

SASDC92 – Rab family protein CtRoco GppNHp

Rab family protein experimental SAS data
Rab family protein Kratky plot
Sample: Rab family protein dimer, 254 kDa Chlorobaculum tepidum protein
Buffer: 20 mM HEPES 150 mM NaCl 5 mM MgCl2 5% Glycerol 1 mM DTT 200µM GppNHp, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2015 Feb 16
A homologue of the Parkinson's disease-associated protein LRRK2 undergoes a monomer-dimer transition during GTP turnover. Nat Commun 8(1):1008 (2017)
Deyaert E, Wauters L, Guaitoli G, Konijnenberg A, Leemans M, Terheyden S, Petrovic A, Gallardo R, Nederveen-Schippers LM, Athanasopoulos PS, Pots H, Van Haastert PJM, Sobott F, Gloeckner CJ, Efremov R, Kortholt A, Versées W
RgGuinier 6.2 nm
Dmax 25.3 nm
VolumePorod 354 nm3

SASDCA2 – Rab family protein CtRoco GDP

Rab family protein experimental SAS data
Rab family protein Kratky plot
Sample: Rab family protein dimer, 254 kDa Chlorobaculum tepidum protein
Buffer: 20 mM HEPES 150 mM NaCl 5 mM MgCl2 5% Glycerol 1 mM DTT 200µM GDP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2015 Jun 17
A homologue of the Parkinson's disease-associated protein LRRK2 undergoes a monomer-dimer transition during GTP turnover. Nat Commun 8(1):1008 (2017)
Deyaert E, Wauters L, Guaitoli G, Konijnenberg A, Leemans M, Terheyden S, Petrovic A, Gallardo R, Nederveen-Schippers LM, Athanasopoulos PS, Pots H, Van Haastert PJM, Sobott F, Gloeckner CJ, Efremov R, Kortholt A, Versées W
RgGuinier 5.9 nm
Dmax 22.4 nm
VolumePorod 491 nm3

SASDCB2 – Rab family protein CtRoc-COR nucleotide free

Rab family protein experimental SAS data
DAMMIN model
Sample: Rab family protein dimer, 130 kDa Chlorobaculum tepidum protein
Buffer: 20 mM HEPES 150 mM NaCl 5 mM MgCl2 5% Glycerol 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2017 Feb 1
A homologue of the Parkinson's disease-associated protein LRRK2 undergoes a monomer-dimer transition during GTP turnover. Nat Commun 8(1):1008 (2017)
Deyaert E, Wauters L, Guaitoli G, Konijnenberg A, Leemans M, Terheyden S, Petrovic A, Gallardo R, Nederveen-Schippers LM, Athanasopoulos PS, Pots H, Van Haastert PJM, Sobott F, Gloeckner CJ, Efremov R, Kortholt A, Versées W
RgGuinier 3.4 nm
Dmax 10.0 nm
VolumePorod 211 nm3

SASDCC2 – Rab family protein CtRoc-COR GDP

Rab family protein experimental SAS data
Rab family protein Kratky plot
Sample: Rab family protein dimer, 130 kDa Chlorobaculum tepidum protein
Buffer: 20 mM HEPES 150 mM NaCl 5 mM MgCl2 5% Glycerol 1 mM DTT 200µ M GDP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2017 Feb 1
A homologue of the Parkinson's disease-associated protein LRRK2 undergoes a monomer-dimer transition during GTP turnover. Nat Commun 8(1):1008 (2017)
Deyaert E, Wauters L, Guaitoli G, Konijnenberg A, Leemans M, Terheyden S, Petrovic A, Gallardo R, Nederveen-Schippers LM, Athanasopoulos PS, Pots H, Van Haastert PJM, Sobott F, Gloeckner CJ, Efremov R, Kortholt A, Versées W
RgGuinier 3.5 nm
Dmax 10.0 nm
VolumePorod 197 nm3

SASDCD2 – Rab family protein CtRoc-COR GppNHp

Rab family protein experimental SAS data
Rab family protein Kratky plot
Sample: Rab family protein dimer, 130 kDa Chlorobaculum tepidum protein
Buffer: 20 mM HEPES 150 mM NaCl 5 mM MgCl2 5% Glycerol 1 mM DTT 200µM GppNHp, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2017 Feb 1
A homologue of the Parkinson's disease-associated protein LRRK2 undergoes a monomer-dimer transition during GTP turnover. Nat Commun 8(1):1008 (2017)
Deyaert E, Wauters L, Guaitoli G, Konijnenberg A, Leemans M, Terheyden S, Petrovic A, Gallardo R, Nederveen-Schippers LM, Athanasopoulos PS, Pots H, Van Haastert PJM, Sobott F, Gloeckner CJ, Efremov R, Kortholt A, Versées W
RgGuinier 3.4 nm
Dmax 10.5 nm
VolumePorod 154 nm3

SASDCE2 – Rab family protein CtRoco L487A GDP

Rab family protein experimental SAS data
Rab family protein Kratky plot
Sample: Rab family protein dimer, 254 kDa Chlorobaculum tepidum protein
Buffer: 20 mM HEPES 150 mM NaCl 5 mM MgCl2 5% Glycerol 1 mM DTT 200µM GDP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2015 Jun 17
A homologue of the Parkinson's disease-associated protein LRRK2 undergoes a monomer-dimer transition during GTP turnover. Nat Commun 8(1):1008 (2017)
Deyaert E, Wauters L, Guaitoli G, Konijnenberg A, Leemans M, Terheyden S, Petrovic A, Gallardo R, Nederveen-Schippers LM, Athanasopoulos PS, Pots H, Van Haastert PJM, Sobott F, Gloeckner CJ, Efremov R, Kortholt A, Versées W
RgGuinier 5.9 nm
Dmax 21.8 nm
VolumePorod 469 nm3