Browse by ORGANISM: other species

SASDQK9 – An assembly between C-terminal truncated Netrin UNC-6, the extracellular domains of Netrin receptor UNC-5 and UNC-40 with porcine intestinal mucosa heparin (UNC-6ΔC-heparin-UNC-5 ECD-UNC-40 ECD complex)

Netrin unc-6Isoform a of Netrin receptor unc-5Heparin, porcine intestinal mucosaNetrin receptor unc-40 experimental SAS data
Netrin unc-6 Isoform a of Netrin receptor unc-5 Heparin, porcine intestinal mucosa Netrin receptor unc-40 Kratky plot
Sample: Netrin unc-6 monomer, 52 kDa Caenorhabditis elegans protein
Isoform a of Netrin receptor unc-5 monomer, 38 kDa Caenorhabditis elegans protein
Heparin, porcine intestinal mucosa monomer, 15 kDa Sus scrofa domesticus
Netrin receptor unc-40 monomer, 118 kDa Caenorhabditis elegans protein
Buffer: 10 mM HEPES pH 7.2, 150 mM NaCl, 100 mM MgSO4, pH: 7.2
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Dec 11
Structural insights into the formation of repulsive netrin guidance complexes. Sci Adv 10(7):eadj8083 (2024)
Priest JM, Nichols EL, Smock RG, Hopkins JB, Mendoza JL, Meijers R, Shen K, Özkan E
RgGuinier 10.6 nm
Dmax 36.5 nm
VolumePorod 3410 nm3

SASDTM5 – Proteusin peptide

NHLP leader peptide family natural product (I56V) experimental SAS data
NHLP leader peptide family natural product (I56V) Kratky plot
Sample: NHLP leader peptide family natural product (I56V) monomer, 9 kDa Methylovulum psychrotolerans protein
Buffer: 20 mM sodium phosphate (pH 7.5), 100 mM NaCl and 48 µM FAD, pH: 7.5
Experiment: SAXS data collected at Rigaku BioSAXS-2000, Pennsylvania State University on 2023 Jul 28
Disordered regions in proteusin peptides guide post-translational modification by a flavin-dependent RiPP brominase. Nat Commun 15(1):1265 (2024)
Nguyen NA, Vidya FNU, Yennawar NH, Wu H, McShan AC, Agarwal V
RgGuinier 1.9 nm
Dmax 5.5 nm
VolumePorod 39 nm3

SASDRH9 – High mobility group protein B1, HMGB1

High mobility group protein B1 (D189E, E202D, E215D) experimental SAS data
High mobility group protein B1, HMGB1 Rg histogram
Sample: High mobility group protein B1 (D189E, E202D, E215D) monomer, 25 kDa Rattus norvegicus protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Nov 11
The acidic intrinsically disordered region of the inflammatory mediator HMGB1 mediates fuzzy interactions with CXCL12. Nat Commun 15(1):1201 (2024)
Mantonico MV, De Leo F, Quilici G, Colley LS, De Marchis F, Crippa M, Mezzapelle R, Schulte T, Zucchelli C, Pastorello C, Carmeno C, Caprioglio F, Ricagno S, Giachin G, Ghitti M, Bianchi ME, Musco G
RgGuinier 2.6 nm
Dmax 8.5 nm
VolumePorod 53 nm3

SASDKU9 – Thymidylate kinase (dTMP kinase) at pH 8.0

dTMP kinase experimental SAS data
GASBOR model
Sample: DTMP kinase dimer, 57 kDa Brugia malayi protein
Buffer: 20 mM Tris, 150 mM NaCl, pH: 8
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2018 Oct 7
Crystal Structure of the Brugia malayi Thymidylate Kinase-dTMP Complex and Small Angle X-ray Scattering Experiments Identifies Changes in the Dimeric Association Compared to the Human Homolog Crystallography Reports 68(7):1150-1158 (2024)
Vishwakarma J, Sharma V, Kumar S, Ramachandran R
RgGuinier 3.0 nm
Dmax 8.4 nm
VolumePorod 81 nm3

SASDKL8 – S10 carboxypeptidase from Deinococccus radiodurans (S10drt1)

Carboxypeptidase-related protein experimental SAS data
GASBOR model
Sample: Carboxypeptidase-related protein 16-mer, 903 kDa Deinococcus radiodurans (strain … protein
Buffer: 20 mM Tris-Cl, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at BL-18, INDUS-2 on 2020 Dec 25
Novel oligomeric assembly of S10-carboxypeptidase from Deinococcus radiodurans
Dr. Rahul Singh
RgGuinier 7.4 nm
Dmax 16.8 nm
VolumePorod 1180 nm3

SASDT29 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 25 °C

CH505TFchim.6R.SOSIP.664 Env glycoprotein experimental SAS data
CH505TFchim.6R.SOSIP.664 Env glycoprotein Kratky plot
Sample: CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer: 15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment: SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 27
Microsecond dynamics control the HIV-1 Envelope conformation. Sci Adv 10(5):eadj0396 (2024)
Bennett AL, Edwards R, Kosheleva I, Saunders C, Bililign Y, Williams A, Bubphamala P, Manosouri K, Anasti K, Saunders KO, Alam SM, Haynes BF, Acharya P, Henderson R
RgGuinier 4.6 nm
Dmax 15.5 nm
VolumePorod 705 nm3

SASDT39 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 35 °C

CH505TFchim.6R.SOSIP.664 Env glycoprotein experimental SAS data
CH505TFchim.6R.SOSIP.664 Env glycoprotein Kratky plot
Sample: CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer: 15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment: SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 27
Microsecond dynamics control the HIV-1 Envelope conformation. Sci Adv 10(5):eadj0396 (2024)
Bennett AL, Edwards R, Kosheleva I, Saunders C, Bililign Y, Williams A, Bubphamala P, Manosouri K, Anasti K, Saunders KO, Alam SM, Haynes BF, Acharya P, Henderson R
RgGuinier 4.6 nm
Dmax 15.4 nm
VolumePorod 704 nm3

SASDT49 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 44 °C

CH505TFchim.6R.SOSIP.664 Env glycoprotein experimental SAS data
CH505TFchim.6R.SOSIP.664 Env glycoprotein Kratky plot
Sample: CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer: 15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment: SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 27
Microsecond dynamics control the HIV-1 Envelope conformation. Sci Adv 10(5):eadj0396 (2024)
Bennett AL, Edwards R, Kosheleva I, Saunders C, Bililign Y, Williams A, Bubphamala P, Manosouri K, Anasti K, Saunders KO, Alam SM, Haynes BF, Acharya P, Henderson R
RgGuinier 4.6 nm
Dmax 15.6 nm
VolumePorod 702 nm3

SASDT59 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 50 °C

CH505TFchim.6R.SOSIP.664 Env glycoprotein experimental SAS data
CH505TFchim.6R.SOSIP.664 Env glycoprotein Kratky plot
Sample: CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer: 15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment: SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 29
Microsecond dynamics control the HIV-1 Envelope conformation. Sci Adv 10(5):eadj0396 (2024)
Bennett AL, Edwards R, Kosheleva I, Saunders C, Bililign Y, Williams A, Bubphamala P, Manosouri K, Anasti K, Saunders KO, Alam SM, Haynes BF, Acharya P, Henderson R
RgGuinier 4.6 nm
Dmax 15.6 nm
VolumePorod 699 nm3

SASDT69 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 1.5 µs post temperature jump (44 °C - 50 °C)

CH505TFchim.6R.SOSIP.664 Env glycoprotein experimental SAS data
CH505TFchim.6R.SOSIP.664 Env glycoprotein Kratky plot
Sample: CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer: 15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment: SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 30
Microsecond dynamics control the HIV-1 Envelope conformation. Sci Adv 10(5):eadj0396 (2024)
Bennett AL, Edwards R, Kosheleva I, Saunders C, Bililign Y, Williams A, Bubphamala P, Manosouri K, Anasti K, Saunders KO, Alam SM, Haynes BF, Acharya P, Henderson R
RgGuinier 4.6 nm
Dmax 15.5 nm
VolumePorod 706 nm3