Small Angle Scattering Biological Data Bank SASBDB

SASDJS3 – Adenylate cyclase toxin CyaA RTX block II-V

Bifunctional hemolysin/adenylate cyclase experimental SAS data

Sample:	Bifunctional hemolysin/adenylate cyclase monomer, 57 kDa Bordetella pertussis protein
Buffer:	10 mM Tris HCl, 150 mM NaCl, 10 mM CaCl₂, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2013 Oct 31

Continuous Assembly of β-Roll Structures Is Implicated in the Type I-Dependent Secretion of Large Repeat-in-Toxins (RTX) Proteins. J Mol Biol (2020)
Motlova L, Klimova N, Fiser R, Sebo P, Bumba L

R_g^Guinier	4.0	nm
D_max	13.3	nm
Volume^Porod	94	nm³

SASDJT3 – Adenylate cyclase toxin CyaA RTX block III-V

Sample:	Bifunctional hemolysin/adenylate cyclase monomer, 45 kDa Bordetella pertussis protein
Buffer:	10 mM Tris HCl, 150 mM NaCl, 10 mM CaCl₂, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2013 Oct 31

R_g^Guinier	3.4	nm
D_max	12.1	nm
Volume^Porod	85	nm³

SASDJU3 – Adenylate cyclase toxin CyaA RTX block IV-V

Sample:	Bifunctional hemolysin/adenylate cyclase monomer, 32 kDa Bordetella pertussis protein
Buffer:	10 mM Tris HCl, 150 mM NaCl, 10 mM CaCl₂, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2013 Oct 31

R_g^Guinier	2.7	nm
D_max	8.6	nm
Volume^Porod	45	nm³

SASDFT8 – The retinoic acid receptor (RAR-RXR heterodimer) bound to the DNA response element HoxB13 DR0

Retinoic acid receptor alpha, RARRetinoic acid receptor RXR-alphaDNA response element HoxB13 DR0 experimental SAS data

Sample:	Retinoic acid receptor alpha, RAR monomer, 41 kDa Mus musculus protein Retinoic acid receptor RXR-alpha monomer, 38 kDa Mus musculus protein DNA response element HoxB13 DR0 monomer, 10 kDa DNA
Buffer:	20 mM Tris, pH 8, 150 mM NaCl, 5% v/v glycerol, 1 mM CHAPS, 4 mM MgSO4, 1 mM TCEP, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2014 Jan 19

Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR–RXR Nucleic Acids Research (2020)
Osz J, McEwen A, Bourguet M, Przybilla F, Peluso-Iltis C, Poussin-Courmontagne P, Mély Y, Cianférani S, Jeffries C, Svergun D, Rochel N

R_g^Guinier	3.8	nm
D_max	14.5	nm
Volume^Porod	132	nm³

SASDFU8 – The retinoic acid receptor (RAR-RXR heterodimer) bound to the DNA response element F11r DR5.

Retinoic acid receptor alpha, RARRetinoic acid receptor RXR-alphaDNA response element F11r DR5 experimental SAS data

Sample:	Retinoic acid receptor alpha, RAR monomer, 41 kDa Mus musculus protein Retinoic acid receptor RXR-alpha monomer, 38 kDa Mus musculus protein DNA response element F11r DR5 monomer, 13 kDa DNA
Buffer:	20 mM Tris, pH 8, 150 mM NaCl, 5% v/v glycerol, 1 mM CHAPS, 4 mM MgSO4, 1 mM TCEP, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2014 Jan 19

R_g^Guinier	4.0	nm
D_max	13.5	nm
Volume^Porod	130	nm³

SASDJQ6 – Full-length Collagenase H containing N-terminal Catalytic domain and C-terminal Non-Catalytic domains Polycystic Kidney disease domain 1 (PKD1), Polycystic Kidney disease domain 2 (PKD2) and Collagen ...

Collagenase ColH (Full-length) experimental SAS data

Sample:	Collagenase ColH (Full-length) monomer, 112 kDa Hathewaya histolytica protein
Buffer:	10 mM HEPES, 100 mM NaCl, 0.4 mM EGTA, 2.4 mM CaCl2, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Dec 12

Aromatic residues, Tyr780, His782, Tyr796, Tyr801, located on PKD2 domain of Hathewaya histolytica collagenase, ColH, are involved in the 10-fold enhancement of binding affinity for the enzyme towards...
Perry Caviness

R_g^Guinier	4.1	nm
D_max	14.0	nm
Volume^Porod	198	nm³

SASDJS6 – Collagenase H C-terminal non-catalytic segments Polycystic Kidney disease domain 2 (PKD2) and Collagen binding domain (CBD) bound to triple helical collagen like-peptide [(POG)10]3

Collagenous Peptide model [(PPG)10]Collagenase ColH (Polycystic kidney disease domain 2 (PKD2) and Collagen binding domain (CBD)) experimental SAS data

Sample:	Collagenous Peptide model [(PPG)10] trimer, 9 kDa synthetic construct protein Collagenase ColH (Polycystic kidney disease domain 2 (PKD2) and Collagen binding domain (CBD)) monomer, 23 kDa Hathewaya histolytica protein
Buffer:	50 mM HEPES, 100 mM NaCl, 5 mM CaCl2, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Dec 12

R_g^Guinier	3.5	nm
D_max	14.5	nm
Volume^Porod	41	nm³

SASDJT6 – Collagenase H C-terminal non-catalytic segments Polycystic Kidney disease domain 1, Polycystic Kidney disease domain 2 and Collagen binding domain (CBD) with Y689S, F712S, Y780S, H782S, Y796S and Y801...

Collagen like-peptide [GPRG(POG)13]Collagenase ColH (Polycystic kidney disease 1 (PKD1), Polycystic kidney disease domain 2 (PKD2) and Collagen binding domain (CBD) with Tyr689Ser, Phe712Ser, Tyr780Ser, His782Ser, Tyr796Ser and Tyr801) experimental SAS data

Sample:	Collagen like-peptide [GPRG(POG)13] trimer, 11 kDa protein Collagenase ColH (Polycystic kidney disease 1 (PKD1), Polycystic kidney disease domain 2 (PKD2) and Collagen binding domain (CBD) with Tyr689Ser, Phe712Ser, Tyr780Ser, His782Ser, Tyr796Ser and Tyr801) monomer, 33 kDa Hathewaya histolytica protein
Buffer:	50 mM HEPES, 100 mM NaCl, 5 mM CaCl2, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Mar 5

R_g^Guinier	4.0	nm
D_max	22.0	nm
Volume^Porod	61	nm³

SASDJU6 – Collagenase H C-terminal non-catalytic segments Polycystic Kidney disease domain 1 (PKD1), Polycystic Kidney disease domain 2 (PKD2) and Collagen binding domain (CBD) with Tyr689Ser, Phe712Ser, Tyr780...

Collagenase ColH (Polycystic kidney disease 1 (PKD1), Polycystic kidney disease domain 2 (PKD2) and Collagen binding domain (CBD) with Tyr689Ser, Phe712Ser, Tyr780Ser, His782Ser, Tyr796Ser and Tyr801) experimental SAS data

Sample:	Collagenase ColH (Polycystic kidney disease 1 (PKD1), Polycystic kidney disease domain 2 (PKD2) and Collagen binding domain (CBD) with Tyr689Ser, Phe712Ser, Tyr780Ser, His782Ser, Tyr796Ser and Tyr801) monomer, 33 kDa Hathewaya histolytica protein
Buffer:	50 mM Tris, 1 mM CaCl2, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Mar 5

R_g^Guinier	3.3	nm
D_max	11.0	nm
Volume^Porod	34	nm³

SASDJV6 – Collagenase H C-terminal non-catalytic segments Polycystic Kidney disease domain 1 (PKD1), Polycystic Kidney disease domain 2 (PKD2) and Collagen binding domain (CBD) with Tyr689Ser and Phe712Ser boun...

Sample:	Collagen like-peptide [GPRG(POG)13] trimer, 11 kDa protein Collagenase ColH (Polycystic kidney disease 1 (PKD1), Polycystic kidney disease domain 2 (PKD2) and Collagen binding domain (CBD) with Tyr689Ser and Phe712Ser) monomer, 33 kDa Hathewaya histolytica protein
Buffer:	50 mM HEPES, 100 mM NaCl, 5 mM CaCl2, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Dec 12

R_g^Guinier	4.4	nm
D_max	21.0	nm
Volume^Porod	79	nm³

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