SASBDB entries for UniProt ID:

SASDN22 – Dockerin domain-containing protein, starch adherence system 20 (Sas20), domain 1 with maltoheptaose

UniProt ID: A0A2N0URA4 (32-269) Dockerin domain-containing protein
Dockerin domain-containing protein experimental SAS data
Dockerin domain-containing protein Kratky plot
Sample: Dockerin domain-containing protein monomer, 26 kDa Ruminococcus bromii protein
Buffer: phosphate buffered saline, 1 mM TCEP, pH: 7
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Nov 14
Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome Journal of Biological Chemistry :101896 (2022)
Cerqueira F, Photenhauer A, Doden H, Brown A, Abdel-Hamid A, Moraïs S, Bayer E, Wawrzak Z, Cann I, Ridlon J, Hopkins J, Koropatkin N
RgGuinier 2.0 nm
Dmax 7.8 nm
VolumePorod 45 nm3

SASDN32 – Dockerin domain-containing protein, starch adherence system 20 (Sas20), domain 2 with maltoheptaose

UniProt ID: A0A2N0URA4 (32-269) Dockerin domain-containing protein
Dockerin domain-containing protein experimental SAS data
MULTIFOXS model
Sample: Dockerin domain-containing protein monomer, 26 kDa Ruminococcus bromii protein
Buffer: phosphate buffered saline, 1 mM TCEP, pH: 7
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Nov 14
Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome Journal of Biological Chemistry :101896 (2022)
Cerqueira F, Photenhauer A, Doden H, Brown A, Abdel-Hamid A, Moraïs S, Bayer E, Wawrzak Z, Cann I, Ridlon J, Hopkins J, Koropatkin N
RgGuinier 2.1 nm
Dmax 7.4 nm
VolumePorod 41 nm3

SASDN42 – Dockerin domain-containing protein, starch adherence system 20 (Sas20), domains 1 and 2 with maltoheptaose

UniProt ID: A0A2N0URA4 (32-269) Dockerin domain-containing protein
Dockerin domain-containing protein experimental SAS data
Dockerin domain-containing protein Kratky plot
Sample: Dockerin domain-containing protein monomer, 26 kDa Ruminococcus bromii protein
Buffer: phosphate buffered saline, 1 mM TCEP, pH: 7
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Nov 14
Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome Journal of Biological Chemistry :101896 (2022)
Cerqueira F, Photenhauer A, Doden H, Brown A, Abdel-Hamid A, Moraïs S, Bayer E, Wawrzak Z, Cann I, Ridlon J, Hopkins J, Koropatkin N
RgGuinier 5.2 nm
Dmax 19.0 nm
VolumePorod 84 nm3

SASDN52 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 1.7

UniProt ID: P00138 (1-127) Cytochrome c'
Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' monomer, 14 kDa Achromobacter xylosoxidans protein
Buffer: Phosphate Buffer pD 1.7, pH: 1.7
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 2.3 nm
Dmax 8.6 nm
VolumePorod 13 nm3

SASDN62 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 6.4

UniProt ID: P00138 (1-127) Cytochrome c'
Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' dimer, 27 kDa Alcaligenes protein
Buffer: Phosphate Buffer pD 6.4, pH: 6.4
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 1.8 nm
Dmax 5.5 nm
VolumePorod 11 nm3

SASDN72 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 9.6

UniProt ID: P00138 (1-127) Cytochrome c'
Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' dimer, 27 kDa Alcaligenes protein
Buffer: Phosphate Buffer pD 9.6, pH: 9.6
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 1.9 nm
Dmax 5.3 nm
VolumePorod 10 nm3

SASDN82 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 13

UniProt ID: P00138 (1-127) Cytochrome c'
Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' monomer, 14 kDa Achromobacter xylosoxidans protein
Buffer: Phosphate Buffer pD 13, pH: 13
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 4.8 nm
Dmax 9.0 nm
VolumePorod 20 nm3

SASDN92 – Apoform of glyceraldehyde-3-phosphate dehydrogenase (apo-kmGAPDH1p)

UniProt ID: P84998 (None-None) Glyceraldehyde-3-phosphate dehydrogenase 1
Glyceraldehyde-3-phosphate dehydrogenase 1 experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glyceraldehyde-3-phosphate dehydrogenase 1 tetramer, 142 kDa Kluyveromyces marxianus protein
Buffer: 150 mM NaCl, 1 mM beta-mercaptoethanol, 1 mM EDTA, 10 mM TrisHCl, pH: 7.5
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2006 Mar 27
The Crystal and Solution Structures of Glyceraldehyde-3-phosphate Dehydrogenase Reveal Different Quaternary Structures Journal of Biological Chemistry 281(44):33433-33440 (2006)
Ferreira-da-Silva F, Pereira P, Gales L, Roessle M, Svergun D, Moradas-Ferreira P, Damas A
RgGuinier 4.2 nm
Dmax 12.0 nm
VolumePorod 234 nm3

SASDNA2 – Glyceraldehyde-3-phosphate dehydrogenase (apo-kmGAPDH1p) upon NAD+ binding

UniProt ID: P84998 (None-None) Glyceraldehyde-3-phosphate dehydrogenase 1 bound to NAD+
Glyceraldehyde-3-phosphate dehydrogenase 1 bound to NAD+ experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glyceraldehyde-3-phosphate dehydrogenase 1 bound to NAD+ tetramer, 142 kDa Kluyveromyces marxianus protein
Buffer: 150 mM NaCl, 1 mM beta-mercaptoethanol, 1 mM EDTA, 10 mM TrisHCl, pH: 7.5
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2006 Mar 27
The Crystal and Solution Structures of Glyceraldehyde-3-phosphate Dehydrogenase Reveal Different Quaternary Structures Journal of Biological Chemistry 281(44):33433-33440 (2006)
Ferreira-da-Silva F, Pereira P, Gales L, Roessle M, Svergun D, Moradas-Ferreira P, Damas A
RgGuinier 3.7 nm
Dmax 9.9 nm
VolumePorod 202 nm3

SASDNB2 – Human NK inhibitory receptor IRp60 with an immunoglobulin-like fold

UniProt ID: Q9UGN4 (19-123) CMRF35-like molecule 8
CMRF35-like molecule 8 experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: CMRF35-like molecule 8 monomer, 12 kDa Homo sapiens protein
Buffer: MES buffer with 3mM DTT, pH: 5.5
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2006 Apr 6
Molecular analysis and solution structure from small-angle X-ray scattering of the human natural killer inhibitory receptor IRp60 (CD300a) International Journal of Biological Macromolecules 40(3):193-200 (2007)
Dimasi N, Roessle M, Moran O, Candiano G, Svergun D, Biassoni R
RgGuinier 2.0 nm
Dmax 7.0 nm
VolumePorod 22 nm3