Small Angle Scattering Biological Data Bank SASBDB

SASBDB entries for UniProt ID:

SASDWE5 – Shewanella benthica hemoglobin Y108A 150 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Group 1 truncated hemoglobin (C51S, C71S, Y108A) experimental SAS data

Group 1 truncated hemoglobin (C51S, C71S, Y108A) Kratky plot

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

Extremophilic hemoglobins: The structure of Shewanella benthica truncated hemoglobin N Journal of Biological Chemistry :108223 (2025)
Martinez Grundman J, Schultz T, Schlessman J, Johnson E, Gillilan R, Lecomte J

R_g^Guinier	1.6	nm
D_max	6.0	nm
Volume^Porod	21	nm³

SASDWF5 – Shewanella benthica hemoglobin Y108A 200 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	1.8	nm
D_max	8.8	nm
Volume^Porod	24	nm³

SASDWG5 – Shewanella benthica hemoglobin Y108A 250 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.1	nm
D_max	9.5	nm
Volume^Porod	25	nm³

SASDWH5 – Shewanella benthica hemoglobin Y108A 300 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.2	nm
D_max	12.0	nm
Volume^Porod	26	nm³

SASDWJ5 – Shewanella benthica hemoglobin Y108A 350 MPa

UniProt ID: A9DF82 (2-117) Group 1 truncated hemoglobin (C51S, C71S, Y108A)

Sample:	Group 1 truncated hemoglobin (C51S, C71S, Y108A), 13 kDa Shewanella benthica KT99 protein
Buffer:	14 mM Tris, 6 mM potassium phosphate, pH: 7
Experiment:	SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2023 Feb 18

R_g^Guinier	2.3	nm
D_max	11.0	nm
Volume^Porod	31	nm³

SASDWQ5 – 2A protein from Theiler's murine encephalomyelitis virus (TMEV)

UniProt ID: Q88595 (923-1055) Genome polyprotein

Genome polyprotein experimental SAS data

Sample:	Genome polyprotein monomer, 17 kDa Theiler's murine encephalomyelitis … protein
Buffer:	20 mM HEPES pH 7.4, 1 M KCl, 2% v/v glycerol, 1 mM DTT, pH:
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Apr 26

A new protein-dependent riboswitch activates ribosomal frameshifting (2025)
Betts J, Jeffries C, Passchier T, Kung H, Graham S, Abdelhamid M, Howard J, Craggs T, Graham S, Brierley I, Leake M, Quinn S, Hill C

R_g^Guinier	1.9	nm
D_max	7.2	nm
Volume^Porod	30	nm³

SASDWS5 – 2A protein from Theiler's murine encephalomyelitis virus (TMEV) bound to stimulatory element RNA

UniProt ID: Q88595 (923-1055) Genome polyprotein

UniProt ID: None (None-None) Stimulatory element RNA

Genome polyproteinStimulatory element RNA experimental SAS data

Sample:	Genome polyprotein monomer, 17 kDa Theiler's murine encephalomyelitis … protein Stimulatory element RNA monomer, 12 kDa synthetic RNA RNA
Buffer:	20 mM HEPES pH 7.4, 400 mM KCl 2% v/v glycerol, 1 mM DTT, pH:
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Apr 26

R_g^Guinier	2.2	nm
D_max	7.5	nm
Volume^Porod	46	nm³

SASDWZ6 – ABC transporter permease protein extracellular domain from S.agalactiae (SaNsrP ECD)

UniProt ID: Q8DZX0 (311-412) ABC transporter, permease protein, extracellular domain

ABC transporter, permease protein, extracellular domain experimental SAS data

ABC transporter, permease protein, extracellular domain Kratky plot

Sample:	ABC transporter, permease protein, extracellular domain monomer, 23 kDa Streptococcus agalactiae serotype … protein
Buffer:	25 mM MES, 500 mM NaCl, pH: 6
Experiment:	SAXS data collected at BM29, ESRF on 2020 Dec 3

The extracellular domain of SaNSrFP binds bacitracin and allows the identification of new members of the BceAB transporter family
Jens Reiners

R_g^Guinier	2.4	nm
D_max	9.0	nm
Volume^Porod	50	nm³

SASDW27 – ABC transporter ATP-binding protein - ABC transporter, permease protein - complex from S.agalactiae (SaNsrFP)

UniProt ID: X5KGL2 (1-250) ABC transporter ATP-binding protein

UniProt ID: Q8DZX0 (1-651) ABC transporter, permease protein

ABC transporter ATP-binding proteinABC transporter, permease protein experimental SAS data

ABC transporter ATP-binding protein ABC transporter, permease protein Kratky plot

Sample:	ABC transporter ATP-binding protein dimer, 62 kDa Streptococcus agalactiae protein ABC transporter, permease protein monomer, 74 kDa Streptococcus agalactiae serotype … protein
Buffer:	50 mM Tris, 300 mM NaCl, 10 % Glycerol, 0.005 % LMNG,, pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2023 Apr 25

The extracellular domain of SaNSrFP binds bacitracin and allows the identification of new members of the BceAB transporter family
Jens Reiners

R_g^Guinier	5.8	nm
D_max	20.5	nm
Volume^Porod	735	nm³

SASDW97 – Recombination directionality factor (6H-RdfS) from M.japonicum bound to 40mer DNA

UniProt ID: Q7AL96 (None-None) Recombination directionality factor RdfS

UniProt ID: None (None-None) attP_8 40-mer DNA

Recombination directionality factor RdfSattP_8 40-mer DNA experimental SAS data

Sample:	Recombination directionality factor RdfS tetramer, 52 kDa Mesorhizobium japonicum R7A protein AttP_8 40-mer DNA dimer, 25 kDa DNA
Buffer:	150 mM Tris-HCl, 300 mM NaCl, 5% v/v glycerol, pH: 7.4
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Jun 19

Structural basis for control of integrative and conjugative element excision and transfer by the oligomeric winged helix–turn–helix protein RdfS Nucleic Acids Research 53(6) (2025)
Verdonk C, Agostino M, Eto K, Hall D, Bond C, Ramsay J

R_g^Guinier	3.8	nm
D_max	13.8	nm
Volume^Porod	134	nm³

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