SASBDB entries for UniProt ID:

SASDD93 – ATP-dependent Clp protease ATP-binding subunit ClpC1

UniProt ID: P9WPC9 (None-None) ATP-dependent Clp protease ATP-binding subunit ClpC1
ATP-dependent Clp protease ATP-binding subunit ClpC1 experimental SAS data
OTHER model
Sample: ATP-dependent Clp protease ATP-binding subunit ClpC1, 95 kDa Mycobacterium tuberculosis protein
Buffer: Hepes 50 mM pH 7.5, KCl 100 mM, glycerol 10%, MgCl2 4 mM and ATP 1 mM, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Sep 18
The antibiotic cyclomarin blocks arginine-phosphate-induced millisecond dynamics in the N-terminal domain of ClpC1 from Mycobacterium tuberculosis. J Biol Chem 293(22):8379-8393 (2018)
Weinhäupl K, Brennich M, Kazmaier U, Lelievre J, Ballell L, Goldberg A, Schanda P, Fraga H
RgGuinier 7.6 nm
Dmax 25.0 nm
VolumePorod 2156 nm3

SASDDA3 – ATP-dependent Clp protease ATP-binding subunit ClpC1, second state

UniProt ID: P9WPC9 (None-None) ATP-dependent Clp protease ATP-binding subunit ClpC1
ATP-dependent Clp protease ATP-binding subunit ClpC1 experimental SAS data
ATP-dependent Clp protease ATP-binding subunit ClpC1 Kratky plot
Sample: ATP-dependent Clp protease ATP-binding subunit ClpC1, 95 kDa Mycobacterium tuberculosis protein
Buffer: Hepes 50 mM pH 7.5, KCl 100 mM, glycerol 10%, MgCl2 4 mM and ATP 1 mM, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Sep 18
The antibiotic cyclomarin blocks arginine-phosphate-induced millisecond dynamics in the N-terminal domain of ClpC1 from Mycobacterium tuberculosis. J Biol Chem 293(22):8379-8393 (2018)
Weinhäupl K, Brennich M, Kazmaier U, Lelievre J, Ballell L, Goldberg A, Schanda P, Fraga H
RgGuinier 7.9 nm
Dmax 25.1 nm
VolumePorod 2416 nm3

SASDDB3 – Human mitochondrial cysteine desulfurase (NFS1, ISD11 and Acp heterodimer complex)

UniProt ID: Q9Y697 (53-457) Cysteine desulfurase, mitochondrial

UniProt ID: Q9HD34 (None-None) LYR motif-containing protein 4

UniProt ID: P0A6A8 (None-None) Acyl carrier protein
Cysteine desulfurase, mitochondrialLYR motif-containing protein 4Acyl carrier protein experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Cysteine desulfurase, mitochondrial dimer, 90 kDa Homo sapiens protein
LYR motif-containing protein 4 dimer, 23 kDa Homo sapiens protein
Acyl carrier protein dimer, 22 kDa Escherichia coli protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at Bruker Nanostar, NMRFAM on 2017 May 22
Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering. Structure 26(8):1127-1136.e4 (2018)
Cai K, Frederick RO, Dashti H, Markley JL
RgGuinier 3.7 nm
Dmax 11.8 nm
VolumePorod 204 nm3

SASDDC3 – Human mitochondrial cysteine desulfurase-ISCU (NFS1, ISD11, Acp and ISCU heterodimer complex)

UniProt ID: Q9Y697 (53-457) Cysteine desulfurase, mitochondrial

UniProt ID: Q9HD34 (None-None) LYR motif-containing protein 4

UniProt ID: P0A6A8 (None-None) Acyl carrier protein

UniProt ID: Q9H1K1 (33-167) Iron-sulfur cluster assembly enzyme ISCU, mitochondrial
Cysteine desulfurase, mitochondrialLYR motif-containing protein 4Acyl carrier proteinIron-sulfur cluster assembly enzyme ISCU, mitochondrial experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Cysteine desulfurase, mitochondrial dimer, 90 kDa Homo sapiens protein
LYR motif-containing protein 4 dimer, 23 kDa Homo sapiens protein
Acyl carrier protein dimer, 22 kDa Escherichia coli protein
Iron-sulfur cluster assembly enzyme ISCU, mitochondrial dimer, 29 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at Bruker Nanostar, NMRFAM on 2017 May 22
Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering. Structure 26(8):1127-1136.e4 (2018)
Cai K, Frederick RO, Dashti H, Markley JL
RgGuinier 3.9 nm
Dmax 13.7 nm
VolumePorod 218 nm3

SASDDD3 – Human mitochondrial cysteine desulfurase-ISCU-Frataxin (NFS1, ISD11 and Acp heterodimer complex)

UniProt ID: Q9Y697 (53-457) Cysteine desulfurase, mitochondrial

UniProt ID: Q9HD34 (None-None) LYR motif-containing protein 4

UniProt ID: P0A6A8 (None-None) Acyl carrier protein

UniProt ID: Q9H1K1 (33-167) Iron-sulfur cluster assembly enzyme ISCU, mitochondrial

UniProt ID: Q16595 (81-210) Frataxin, mitochondrial
Cysteine desulfurase, mitochondrialLYR motif-containing protein 4Acyl carrier proteinIron-sulfur cluster assembly enzyme ISCU, mitochondrialFrataxin, mitochondrial experimental SAS data
HADDOCK model
Sample: Cysteine desulfurase, mitochondrial dimer, 90 kDa Homo sapiens protein
LYR motif-containing protein 4 dimer, 23 kDa Homo sapiens protein
Acyl carrier protein dimer, 22 kDa Escherichia coli protein
Iron-sulfur cluster assembly enzyme ISCU, mitochondrial dimer, 29 kDa Homo sapiens protein
Frataxin, mitochondrial dimer, 29 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at Bruker Nanostar, NMRFAM on 2017 Apr 18
Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering. Structure 26(8):1127-1136.e4 (2018)
Cai K, Frederick RO, Dashti H, Markley JL
RgGuinier 4.1 nm
Dmax 14.4 nm
VolumePorod 287 nm3

SASDDE3 – Human respiratory syncytial virus (HRSV) M2–1 RNA-binding core domain

UniProt ID: Q4KRW3 (73-194) Human respiratory syncytial virus M2-1
Human respiratory syncytial virus M2-1 experimental SAS data
DAMMIF model
Sample: Human respiratory syncytial virus M2-1 monomer, 14 kDa Human orthopneumovirus protein
Buffer: 20 mM Tris–HCl, 300 mM NaCl,, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Dec 13
Structure and stability of the Human respiratory syncytial virus M2-1 RNA-binding core domain reveals a compact and cooperative folding unit. Acta Crystallogr F Struct Biol Commun 74(Pt 1):23-30 (2018)
Molina IG, Josts I, Almeida Hernandez Y, Esperante S, Salgueiro M, Garcia Alai MM, de Prat-Gay G, Tidow H
RgGuinier 2.0 nm
Dmax 7.9 nm
VolumePorod 3 nm3

SASDDF3 – Macrophage migration inhibitory factor bound to Ceruloplasmin (MIF-CP complex)

UniProt ID: P14174 (1-115) Macrophage migration inhibitory factor

UniProt ID: P00450 (1-1065) Ceruloplasmin
Macrophage migration inhibitory factorCeruloplasmin experimental SAS data
CLUSPRO model
Sample: Macrophage migration inhibitory factor trimer, 37 kDa Homo sapiens protein
Ceruloplasmin monomer, 122 kDa Homo sapiens protein
Buffer: 50mkm CuSO4, 100mM Hepes, pH: 7.4
Experiment: SAXS data collected at HECUS System-3, None on 2015 Dec 22
Structural Study of the Complex Formed by Ceruloplasmin and Macrophage Migration Inhibitory Factor. Biochemistry (Mosc) 83(6):701-707 (2018)
Sokolov AV, Dadinova LA, Petoukhov MV, Bourenkov G, Dubova KM, Amarantov SV, Volkov VV, Kostevich VA, Gorbunov NP, Grudinina NA, Vasilyev VB, Samygina VR
RgGuinier 3.6 nm
Dmax 14.4 nm
VolumePorod 228 nm3

SASDDG3 – Solution Structure of Archaeal Biofilm Regulator 2 (AbfR2) in Complex with DNA

UniProt ID: None (None-None) Sa0446 binding sequence 40bp

UniProt ID: Q4J9G1 (1-123) Transcriptional regulator Lrs14-like protein
Sa0446 binding sequence 40bpTranscriptional regulator Lrs14-like protein experimental SAS data
DAMMIF model
Sample: Sa0446 binding sequence 40bp monomer, 25 kDa DNA
Transcriptional regulator Lrs14-like protein dimer, 33 kDa Sulfolobus acidocaldarius protein
Buffer: 300 mM NaCl, 20 mM HEPES, pH 7.5, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 Nov 5
Solution Structure of Archaeal Biofilm Regulator 2 (AbfR2) in Complex with 40 bp DNA
Marian Vogt
RgGuinier 3.4 nm
Dmax 12.8 nm
VolumePorod 60 nm3

SASDDH3 – Solution Structure of Archaeal Biofilm Regulator 2 (AbfR2)

UniProt ID: Q4J9G1 (1-123) Transcriptional regulator Lrs14-like protein
Transcriptional regulator Lrs14-like protein experimental SAS data
DAMMIF model
Sample: Transcriptional regulator Lrs14-like protein dimer, 33 kDa Sulfolobus acidocaldarius protein
Buffer: 300 mM NaCl, 20 mM HEPES, pH 7.5, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2016 May 5
Crystal structure of an Lrs14-like archaeal biofilm regulator from Sulfolobus acidocaldarius. Acta Crystallogr D Struct Biol 74(Pt 11):1105-1114 (2018)
Vogt MS, Völpel SL, Albers SV, Essen LO, Banerjee A
RgGuinier 2.9 nm
Dmax 10.0 nm
VolumePorod 57 nm3

SASDDJ3 – Candida antarctica lipase B - with guanidine-HCl unfolding series

UniProt ID: P41365 (26-342) Lipase B from Pseudozyma antarctica
Lipase B from Pseudozyma antarctica experimental SAS data
Lipase B from Pseudozyma antarctica Kratky plot
Sample: Lipase B from Pseudozyma antarctica, 33 kDa Moesziomyces antarcticus protein
Buffer: 100 mM NaCl, 20 mM Na2HPO4, pH: 6
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Jul 29
Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions. Biophys J 114(11):2485-2492 (2018)
Franke D, Jeffries CM, Svergun DI
RgGuinier 2.4 nm