SASBDB entries for UniProt ID:

SASDEJ6 – Complex of Epstein-Barr nuclear antigen 2 (EBNA2 Type1, amino acids 381-455) and BS69 (Zinc finger MYND domain-containing protein 11: CC-MYND, amino acids 480-602)

UniProt ID: P12978 (381-455) Epstein-Barr nuclear antigen 2

UniProt ID: Q15326-1 (480-602) Zinc finger MYND domain-containing protein 11
Epstein-Barr nuclear antigen 2Zinc finger MYND domain-containing protein 11 experimental SAS data
DAMMIN model
Sample: Epstein-Barr nuclear antigen 2 dimer, 16 kDa Human gammaherpesvirus 4 protein
Zinc finger MYND domain-containing protein 11 tetramer, 60 kDa Homo sapiens protein
Buffer: 20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2017 Nov 29
Increased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth (2018)
Ponnusamy R, Khatri R, Correia P, Mancini E, Farrell P, West M
RgGuinier 4.6 nm
Dmax 13.8 nm
VolumePorod 72 nm3

SASDEK6 – Complex of Epstein-Barr nuclear antigen 2 (EBNA2 Type2, amino acids 348-422) and BS69 (Zinc finger MYND domain-containing protein 11: CC-MYND, amino acids 480-602)

UniProt ID: Q69022 (348-422) Epstein-Barr nuclear antigen 2

UniProt ID: Q15326-1 (480-602) Zinc finger MYND domain-containing protein 11
Epstein-Barr nuclear antigen 2Zinc finger MYND domain-containing protein 11 experimental SAS data
DAMMIN model
Sample: Epstein-Barr nuclear antigen 2 dimer, 16 kDa Human gammaherpesvirus 4 protein
Zinc finger MYND domain-containing protein 11 hexamer, 90 kDa Homo sapiens protein
Buffer: 20mM Tris-HCl, 100mM NaCl, 2% Sucrose and 1mM TCEP, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2017 Sep 23
Increased association between Epstein-Barr virus EBNA2 from type 2 strains and the transcriptional repressor BS69 restricts B cell growth (2018)
Ponnusamy R, Khatri R, Correia P, Mancini E, Farrell P, West M
RgGuinier 4.7 nm
Dmax 14.5 nm
VolumePorod 239 nm3

SASDEL6 – Glucosamine kinase from Streptacidiphilus jiangxiensis

UniProt ID: A0A1H7TQR5 (None-None) Glucosamine kinase
Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2016 Nov 24
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.6 nm
Dmax 8.0 nm
VolumePorod 72 nm3

SASDEM6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 0.2 M D-glucosamine

UniProt ID: A0A1H7TQR5 (None-None) Glucosamine kinase
Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 0.2 M D-glucosamine, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2017 Nov 20
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.6 nm
Dmax 8.0 nm
VolumePorod 78 nm3

SASDEN6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 1 mM ATP

UniProt ID: A0A1H7TQR5 (None-None) Glucosamine kinase
Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 1 mM ATP, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2016 Nov 24
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.5 nm
Dmax 7.8 nm
VolumePorod 73 nm3

SASDEP6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 0.2 M D-glucosamine and 1 mM ATP

UniProt ID: A0A1H7TQR5 (None-None) Glucosamine kinase
Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 0.2 M D-glucosamine, 1 mM ATP, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2017 Nov 20
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.5 nm
Dmax 7.7 nm
VolumePorod 76 nm3

SASDEQ6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 50 mM D-glucose

UniProt ID: A0A1H7TQR5 (None-None) Glucosamine kinase
Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 50 mM D-glucose, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2018 Apr 13
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.6 nm
Dmax 8.0 nm
VolumePorod 73 nm3

SASDER6 – Glucosamine kinase from Streptacidiphilus jiangxiensis in presence of 50 mM D-glucose and 1 mM ATP

UniProt ID: A0A1H7TQR5 (None-None) Glucosamine kinase
Glucosamine kinase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Glucosamine kinase monomer, 48 kDa Streptacidiphilus jiangxiensis protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 10 mM MgCl2, 5 mM DTT, 50 mM D-glucose, 1 mM ATP, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2016 Nov 24
Molecular Fingerprints for a Novel Enzyme Family in Actinobacteria with Glucosamine Kinase Activity. MBio 10(3) (2019)
Manso JA, Nunes-Costa D, Macedo-Ribeiro S, Empadinhas N, Pereira PJB
RgGuinier 2.5 nm
Dmax 7.7 nm
VolumePorod 73 nm3

SASDES6 – The 11S subunit of the Plasmodium falciparum proteasome, PA28

UniProt ID: Q8I374 (None-None) Proteasome activator PA28
Proteasome activator PA28 experimental SAS data
CORAL model
Sample: Proteasome activator PA28 heptamer, 232 kDa Plasmodium falciparum protein
Buffer: 20 mM Tris-HCl, 150 mM NaCl, 0.5 mM TCEP, 0.1% sodium azide, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2017 Dec 2
The structure of the PA28-20S proteasome complex from Plasmodium falciparum and implications for proteostasis. Nat Microbiol 4(11):1990-2000 (2019)
Xie SC, Metcalfe RD, Hanssen E, Yang T, Gillett DL, Leis AP, Morton CJ, Kuiper MJ, Parker MW, Spillman NJ, Wong W, Tsu C, Dick LR, Griffin MDW, Tilley L
RgGuinier 4.3 nm
Dmax 12.9 nm
VolumePorod 484 nm3

SASDET6 – Polyglutamine-binding protein 1 p.Lys192Serfs*7 (PQBP-1 XLID mutant K192Sfs*7)

UniProt ID: O60828 (1-192) Polyglutamine-binding protein 1 p.Lys192Serfs*7
Polyglutamine-binding protein 1 p.Lys192Serfs*7 experimental SAS data
Polyglutamine-binding protein 1 p.Lys192Serfs*7 (PQBP-1 XLID mutant K192Sfs*7) Rg histogram
Sample: Polyglutamine-binding protein 1 p.Lys192Serfs*7 dimer, 47 kDa Homo sapiens protein
Buffer: Phosphate-buffered saline, pH: 7.4
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2013 Feb 15
Frameshift PQBP-1 mutants K192Sfs*7 and R153Sfs*41 implicated in X-linked intellectual disability form stable dimers. J Struct Biol (2019)
Rahman SK, Okazawa H, Chen YW
RgGuinier 3.5 nm
Dmax 13.0 nm
VolumePorod 114 nm3