Browse by DISSEMINATION: Published

SASDNQ9 – Acyltransferase domain of polyketide synthase Pks13 at neutral pH

Polyketide synthase Pks13 experimental SAS data
DAMMIN model
Sample: Polyketide synthase Pks13 monomer, 51 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 50 mM Tris-HCl, 300 mM NaCl, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2011 Jun 3
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. BMC Biol 20(1):147 (2022)
Bon C, Cabantous S, Julien S, Guillet V, Chalut C, Rima J, Brison Y, Malaga W, Sanchez-Dafun A, Gavalda S, Quémard A, Marcoux J, Waldo GS, Guilhot C, Mourey L
RgGuinier 2.8 nm
Dmax 8.0 nm
VolumePorod 85 nm3

SASDNR9 – Subfragment ACP1KSAT tridomain of polyketide synthase Pks13 at neutral pH

Polyketide synthase Pks13 experimental SAS data
DAMMIN model
Sample: Polyketide synthase Pks13 monomer, 116 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 50 mM Tris-HCl 50 mM NaCl, pH: 8.5
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2006 Nov 1
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. BMC Biol 20(1):147 (2022)
Bon C, Cabantous S, Julien S, Guillet V, Chalut C, Rima J, Brison Y, Malaga W, Sanchez-Dafun A, Gavalda S, Quémard A, Marcoux J, Waldo GS, Guilhot C, Mourey L
RgGuinier 3.8 nm
Dmax 12.9 nm
VolumePorod 186 nm3

SASDNS9 – KS domain of polyketide synthase Pks13 at neutral pH

Polyketide synthase Pks13 experimental SAS data
DAMMIN model
Sample: Polyketide synthase Pks13 monomer, 51 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 50 mM Tris-HCl, 50 mM NaCl, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2012 Dec 7
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. BMC Biol 20(1):147 (2022)
Bon C, Cabantous S, Julien S, Guillet V, Chalut C, Rima J, Brison Y, Malaga W, Sanchez-Dafun A, Gavalda S, Quémard A, Marcoux J, Waldo GS, Guilhot C, Mourey L
RgGuinier 2.9 nm
Dmax 10.0 nm
VolumePorod 82 nm3

SASDNT9 – Subfragment KSAT of Polyketide synthase Pks13 at neutral pH

Polyketide synthase Pks13 experimental SAS data
DAMMIN model
Sample: Polyketide synthase Pks13 monomer, 104 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 50 mM Tris-HCl, 50 mM NaCl, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2008 Sep 20
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. BMC Biol 20(1):147 (2022)
Bon C, Cabantous S, Julien S, Guillet V, Chalut C, Rima J, Brison Y, Malaga W, Sanchez-Dafun A, Gavalda S, Quémard A, Marcoux J, Waldo GS, Guilhot C, Mourey L
RgGuinier 3.8 nm
Dmax 13.0 nm
VolumePorod 155 nm3

SASDNU9 – Mycocerosic acid synthase in its apo form and at neutral pH

Mycocerosic acid synthase experimental SAS data
DAMMIN model
Sample: Mycocerosic acid synthase monomer, 224 kDa Mycobacterium bovis (strain … protein
Buffer: 50 mM Tris-HCl, 50 mM NaCl, 10% glycerol, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2013 Oct 1
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. BMC Biol 20(1):147 (2022)
Bon C, Cabantous S, Julien S, Guillet V, Chalut C, Rima J, Brison Y, Malaga W, Sanchez-Dafun A, Gavalda S, Quémard A, Marcoux J, Waldo GS, Guilhot C, Mourey L
RgGuinier 5.7 nm
Dmax 21.0 nm
VolumePorod 420 nm3

SASDNV9 – Phenolpthiocerol synthase A of BCG at neutral pH

Phenolpthiocerol synthesis type-I polyketide synthase ppsA experimental SAS data
DAMMIN model
Sample: Phenolpthiocerol synthesis type-I polyketide synthase ppsA monomer, 199 kDa Mycobacterium bovis (strain … protein
Buffer: 50 mM Tris-HCl, 500 mM NaCl, 2 mM EDTA, 10% glycerol, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2012 Jun 14
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. BMC Biol 20(1):147 (2022)
Bon C, Cabantous S, Julien S, Guillet V, Chalut C, Rima J, Brison Y, Malaga W, Sanchez-Dafun A, Gavalda S, Quémard A, Marcoux J, Waldo GS, Guilhot C, Mourey L
RgGuinier 6.7 nm
Dmax 20.2 nm
VolumePorod 680 nm3

SASDMS5 – Glutathione S-transferase/RNA recognition motif (RRM)-containing protein 4 fusion

RNA recognition motif (RRM)-containing protein 4 experimental SAS data
Glutathione S-transferase/RNA recognition motif (RRM)-containing protein 4 fusion Rg histogram
Sample: RNA recognition motif (RRM)-containing protein 4 monomer, 111 kDa Ustilago maydis protein
Buffer: 20 mM Hepes, 200 mM NaCl, 1 mM βME, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2021 Apr 30
A MademoiseLLE domain binding platform links the key RNA transporter to endosomes PLOS Genetics 18(6):e1010269 (2022)
Devan S, Schott-Verdugo S, Müntjes K, Bismar L, Reiners J, Hachani E, Schmitt L, Höppner A, Smits S, Gohlke H, Feldbrügge M, Mitchell A
RgGuinier 8.8 nm
Dmax 30.7 nm
VolumePorod 587 nm3

SASDMT5 – N-terminal histidine tagged RNA recognition motif (RRM)-containing protein 4 NT4

RNA recognition motif (RRM)-containing protein 4 NT4 experimental SAS data
N-terminal histidine tagged RNA recognition motif (RRM)-containing protein 4 NT4 Rg histogram
Sample: RNA recognition motif (RRM)-containing protein 4 NT4 monomer, 40 kDa Ustilago maydis protein
Buffer: 20 mM Hepes, 200 mM NaCl, 1 mM βME, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2021 Apr 30
A MademoiseLLE domain binding platform links the key RNA transporter to endosomes PLOS Genetics 18(6):e1010269 (2022)
Devan S, Schott-Verdugo S, Müntjes K, Bismar L, Reiners J, Hachani E, Schmitt L, Höppner A, Smits S, Gohlke H, Feldbrügge M, Mitchell A
RgGuinier 5.6 nm
Dmax 18.5 nm
VolumePorod 123 nm3

SASDNV5 – Botulinum Toxin E at acidic pH

Botulinum Toxin Serotype E, endonegative experimental SAS data
GROMACS model
Sample: Botulinum Toxin Serotype E, endonegative monomer, 144 kDa Clostridium botulinum protein
Buffer: 10 mM sodium acetate (20 mM ionic strength), pH: 4
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Oct 6
Elucidation of critical pH-dependent structural changes in Botulinum Neurotoxin E. J Struct Biol :107876 (2022)
Lalaurie CJ, Splevins A, Barata TS, Bunting KA, Higazi DR, Zloh M, Spiteri VA, Perkins SJ, Dalby PA
RgGuinier 4.3 nm
Dmax 15.2 nm
VolumePorod 240 nm3

SASDN55 – A recoverin homology domain with EF hand domain of diacylglycerol kinase alpha under the condition with CaCl2

Diacylglycerol kinase alpha experimental SAS data
DAMMIF model
Sample: Diacylglycerol kinase alpha monomer, 22 kDa Homo sapiens protein
Buffer: 20 mM TrisHCl, 200 mM NaCl, 5 mM DTT, 5% v/v glycerol, 3 mM CaCl2, pH: 7.4
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Dec 8
Ca 2+ ‐induced structural changes and intramolecular interactions in N‐terminal region of diacylglycerol kinase alpha Protein Science 31(7) (2022)
Takahashi D, Yonezawa K, Okizaki Y, Caaveiro J, Ueda T, Shimada A, Sakane F, Shimizu N
RgGuinier 1.9 nm
Dmax 6.2 nm
VolumePorod 44 nm3