Browse by MODEL: Ab initio only

SASDPE3 – GST-Endonuclease 8 2/Single-stranded DNA-binding protein (Nei2-SSB) complex

Endonuclease 8 2Single-stranded DNA-binding protein experimental SAS data
DAMMIF model
Sample: Endonuclease 8 2 dimer, 108 kDa Mycobacterium tuberculosis (strain … protein
Single-stranded DNA-binding protein octamer, 139 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 20 mM Tris, 100 mM NaCl, pH: 8
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2019 Jul 10
Identification and characterization of MtbNei2-SSB forms novel pre-replicative BER complex in Mycobacterium tuberculosis.
Jyoti Vishwakarma
RgGuinier 5.5 nm
Dmax 21.0 nm
VolumePorod 734 nm3

SASDUX7 – Aspergillus niger beta-glucosidase (bgl1), partially deglycosylated with Endoglycosidase H

beta-glucosidase experimental SAS data
GASBOR model
Sample: Beta-glucosidase dimer, 187 kDa Aspergillus niger protein
Buffer: 50 mM sodium acetate, pH: 5
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2024 Feb 15
Aspergillus niger beta-glucosidase (bgl1)
Estella Yee
RgGuinier 4.2 nm
Dmax 14.0 nm
VolumePorod 253 nm3

SASDV52 – Aspergillus niger beta-glucosidase (bgl1), native, glycosylated

beta-glucosidase experimental SAS data
DAMMIN model
Sample: Beta-glucosidase dimer, 187 kDa Aspergillus niger protein
Buffer: 50 mM sodium acetate, pH: 5
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2024 Jun 4
Aspergillus niger beta-glucosidase (bgl1)
Estella Yee
RgGuinier 4.4 nm
Dmax 13.9 nm
VolumePorod 277 nm3

SASDUT6 – Nuclear fusion protein BIK1 in high salt buffer

Nuclear fusion protein BIK1 experimental SAS data
DAMFILT model
Sample: Nuclear fusion protein BIK1 dimer, 106 kDa Saccharomyces cerevisiae (strain … protein
Buffer: 20 mM Tris-HCl pH 7.5, 500 mM NaCl, 2% glycerol, 1 mM DTT, pH:
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 Jul 13
Phase separation of a microtubule plus-end tracking protein into a fluid fractal network (2024)
Czub M, Uliana F, Grubić T, Padeste C, Rosowski K, Dufresne E, Menzel A, Vakonakis I, Gasser U, Steinmetz M
RgGuinier 8.8 nm
Dmax 28.0 nm
VolumePorod 467 nm3

SASDUU6 – Nuclear fusion protein BIK1 coiled-coil in a high salt buffer

Nuclear fusion protein BIK1 experimental SAS data
DAMFILT model
Sample: Nuclear fusion protein BIK1 dimer, 55 kDa Saccharomyces cerevisiae (strain … protein
Buffer: 20 mM Tris-HCl pH 7.5, 500 mM NaCl, 2% glycerol, 1 mM DTT, pH:
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 Jul 13
Phase separation of a microtubule plus-end tracking protein into a fluid fractal network (2024)
Czub M, Uliana F, Grubić T, Padeste C, Rosowski K, Dufresne E, Menzel A, Vakonakis I, Gasser U, Steinmetz M
RgGuinier 8.0 nm
Dmax 27.0 nm
VolumePorod 282 nm3

SASDUV6 – Nuclear fusion protein BIK1 ΔQQFF in a high salt buffer

Nuclear fusion protein BIK1 experimental SAS data
DAMFILT model
Sample: Nuclear fusion protein BIK1 dimer, 105 kDa Saccharomyces cerevisiae (strain … protein
Buffer: 20 mM Tris-HCl pH 7.5, 500 mM NaCl, 2% glycerol, 1 mM DTT, pH:
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 Jul 13
Phase separation of a microtubule plus-end tracking protein into a fluid fractal network (2024)
Czub M, Uliana F, Grubić T, Padeste C, Rosowski K, Dufresne E, Menzel A, Vakonakis I, Gasser U, Steinmetz M
RgGuinier 9.4 nm
Dmax 29.4 nm
VolumePorod 632 nm3

SASDS56 – Nucleotide binding domain, NBD (ABC transporter domain) from the RTX toxin ABC transporter RtxB

RTX toxin transporter experimental SAS data
GASBOR model
Sample: RTX toxin transporter monomer, 28 kDa Kingella kingae ATCC … protein
Buffer: 100 mM HEPES, 10 % glycerol, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Mar 20
Type 1 secretion necessitates a tight interplay between all domains of the ABC transporter Scientific Reports 14(1) (2024)
Anlauf M, Bilsing F, Reiners J, Spitz O, Hachani E, Smits S, Schmitt L
RgGuinier 2.2 nm
Dmax 7.6 nm
VolumePorod 48 nm3

SASDRD5 – A ssr1698 Dri1 hemoprotein, H79A:R90A variant + heme

Ssr1698 protein (H79A:R90A) experimental SAS data
Sample: Ssr1698 protein (H79A:R90A) dimer, 22 kDa Synechocystis sp. (strain … protein
Buffer: 50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Mar 30
A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun 15(1):3167 (2024)
Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy M, Biswas S, Byrnes J, Kreitler DF, Cheng JF, Ghosh A, Almo SC, Iwai M, Niyogi KK, Pakrasi HB, Sarangi R, van Dam H, Yang L, Blaby IK, Blaby-Haas CE
RgGuinier 2.0 nm
Dmax 6.3 nm
VolumePorod 28 nm3

SASDRE5 – A ssr1698 Dri1 hemoprotein, H79A:R90A variant

Ssr1698 protein (H79A:R90A) experimental SAS data
Sample: Ssr1698 protein (H79A:R90A) monomer, 11 kDa Synechocystis sp. (strain … protein
Buffer: 50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Mar 30
A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun 15(1):3167 (2024)
Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy M, Biswas S, Byrnes J, Kreitler DF, Cheng JF, Ghosh A, Almo SC, Iwai M, Niyogi KK, Pakrasi HB, Sarangi R, van Dam H, Yang L, Blaby IK, Blaby-Haas CE
RgGuinier 1.6 nm
Dmax 5.5 nm
VolumePorod 12 nm3

SASDRF5 – A ssr1698 Dri1 hemoprotein, H21A variant

Ssr1698 protein (H21A) experimental SAS data
Sample: Ssr1698 protein (H21A) monomer, 11 kDa Synechocystis sp. (strain … protein
Buffer: 50 mM Hepes, 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Jun 10
A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun 15(1):3167 (2024)
Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy M, Biswas S, Byrnes J, Kreitler DF, Cheng JF, Ghosh A, Almo SC, Iwai M, Niyogi KK, Pakrasi HB, Sarangi R, van Dam H, Yang L, Blaby IK, Blaby-Haas CE
RgGuinier 1.6 nm
Dmax 5.7 nm
VolumePorod 12 nm3