Browse by MODEL: No model

SASDB25 – Cardiac myosin binding protein-C: domains C5-C6-C7

Cardiac myosin binding protein-C: domains C5-C6-C7 experimental SAS data
Cardiac myosin binding protein-C: domains C5-C6-C7 Kratky plot
Sample: Cardiac myosin binding protein-C: domains C5-C6-C7 monomer, 36 kDa Homo sapiens protein
Buffer: 25 mM Tris-HCl, 250 mM NaCl, 2 mM TCEP, 0.02% sodium azide, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Apr 18
Clinically Linked Mutations in the Central Domains of Cardiac Myosin-Binding Protein C with Distinct Phenotypes Show Differential Structural Effects. Structure 24(1):105-115 (2016)
Nadvi NA, Michie KA, Kwan AH, Guss JM, Trewhella J
RgGuinier 3.8 nm
Dmax 14.1 nm
VolumePorod 55 nm3

SASDBW3 – Human calumenin (sarco-endoplasmic reticulum calcium-sensing protein)

Human Calumenin experimental SAS data
Human Calumenin Kratky plot
Sample: Human Calumenin monomer, 29 kDa Homo sapiens protein
Buffer: 25 mM Na-HEPES, 25 mM NaCl, 2.5 mM CaCl2, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2016 Feb 12
Ca-Dependent Folding of Human Calumenin. PLoS One 11(3):e0151547 (2016)
Mazzorana M, Hussain R, Sorensen T
RgGuinier 2.3 nm
Dmax 6.5 nm
VolumePorod 49 nm3

SASDAD8 – Antiapoptotic membrane protein, (DpV84gp022) Deerpox virus

Antiapoptotic membrane protein experimental SAS data
Antiapoptotic membrane protein Kratky plot
Sample: Antiapoptotic membrane protein dimer, 39 kDa Deerpox virus W-1170-84 protein
Buffer: 25 mM HEPES 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2013 May 4
Structural basis of Deerpox virus-mediated inhibition of apoptosis. Acta Crystallogr D Biol Crystallogr 71(Pt 8):1593-603 (2015)
Burton DR, Caria S, Marshall B, Barry M, Kvansakul M
RgGuinier 2.6 nm
Dmax 11.1 nm
VolumePorod 61 nm3

SASDCL6 – Lys63-linked dimer ubiquitin

Polyubiquitin-C experimental SAS data
Polyubiquitin-C Kratky plot
Sample: Polyubiquitin-C dimer, 17 kDa Homo sapiens protein
Buffer: 100mM NaCl, 10mM sodium acetate, pH: 6
Experiment: SAXS data collected at BL19U2, Shanghai Synchrotron Radiation Facility (SSRF) on 2016 Mar 24
Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition. Elife 4 (2015)
Liu Z, Gong Z, Jiang WX, Yang J, Zhu WK, Guo DC, Zhang WP, Liu ML, Tang C
RgGuinier 2.1 nm
Dmax 6.5 nm
VolumePorod 24 nm3

SASDM59 – brome mosaic virus (BMV)

brome mosaic virus (BMV) experimental SAS data
brome mosaic virus (BMV) Kratky plot
Sample: Brome mosaic virus (BMV) monomer, 5000 kDa
Buffer: 50 mM Tris-HCl, 50 mM NaCl, 10 mM KCl, 5 mM MgCl2, pH: 4.6
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2011 Jun 23
Coat Protein-Dependent Behavior of Poly(ethylene glycol) Tails in Iron Oxide Core Virus-like Nanoparticles. ACS Appl Mater Interfaces 7(22):12089-98 (2015)
Malyutin AG, Cheng H, Sanchez-Felix OR, Carlson K, Stein BD, Konarev PV, Svergun DI, Dragnea B, Bronstein LM
Dmax 31.7 nm

SASDM69 – Hepatitis B virus (HBV)

Hepatitis B virus (HBV) experimental SAS data
Hepatitis B virus (HBV) Kratky plot
Sample: Hepatitis B virus (HBV) None,
Buffer: 0.5 M LiCl, 50 mM HEPES, 2 mM DTT, pH 7.5, pH: 7.5
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2011 Jun 23
Coat Protein-Dependent Behavior of Poly(ethylene glycol) Tails in Iron Oxide Core Virus-like Nanoparticles. ACS Appl Mater Interfaces 7(22):12089-98 (2015)
Malyutin AG, Cheng H, Sanchez-Felix OR, Carlson K, Stein BD, Konarev PV, Svergun DI, Dragnea B, Bronstein LM
Dmax 32.0 nm

SASDC73 – Atg1-Atg13-Atg17-Atg31-Atg29 Minipentamer Complex

Serine/threonine-protein kinase ATG1Autophagy-related protein 13Autophagy-related protein 17Autophagy-related protein 29KLLA0A10637p experimental SAS data
Serine/threonine-protein kinase ATG1 Autophagy-related protein 13 Autophagy-related protein 17 Autophagy-related protein 29 KLLA0A10637p Kratky plot
Sample: Serine/threonine-protein kinase ATG1 dimer, 61 kDa Kluyveromyces lactis protein
Autophagy-related protein 13 dimer, 17 kDa Kluyveromyces lactis protein
Autophagy-related protein 17 dimer, 100 kDa Kluyveromyces lactis protein
Autophagy-related protein 29 dimer, 20 kDa Kluyveromyces lactis protein
KLLA0A10637p dimer, 32 kDa Kluyveromyces lactis protein
Buffer: 20 mM Tris, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2013 Dec 20
Solution structure of the Atg1 complex: implications for the architecture of the phagophore assembly site. Structure 23(5):809-818 (2015)
Köfinger J, Ragusa MJ, Lee IH, Hummer G, Hurley JH
RgGuinier 10.3 nm
Dmax 34.0 nm
VolumePorod 1000 nm3

SASDCL3 – Atg1-Atg13 Subcomplex

Serine/threonine-protein kinase ATG1Autophagy-related protein 13 experimental SAS data
Serine/threonine-protein kinase ATG1 Autophagy-related protein 13 Kratky plot
Sample: Serine/threonine-protein kinase ATG1 dimer, 61 kDa Kluyveromyces lactis protein
Autophagy-related protein 13 dimer, 17 kDa Kluyveromyces lactis protein
Buffer: 20 mM Tris, 200 mM NaCl, 2% glycerol, pH: 8
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2013 Dec 10
Solution structure of the Atg1 complex: implications for the architecture of the phagophore assembly site. Structure 23(5):809-818 (2015)
Köfinger J, Ragusa MJ, Lee IH, Hummer G, Hurley JH
RgGuinier 3.3 nm
Dmax 10.9 nm
VolumePorod 160 nm3

SASDCM3 – Atg17-Atg31-Atg29 Subcomplex

Autophagy-related protein 17Autophagy-related protein 29KLLA0A10637p experimental SAS data
Autophagy-related protein 17 Autophagy-related protein 29 KLLA0A10637p Kratky plot
Sample: Autophagy-related protein 17 dimer, 100 kDa Kluyveromyces lactis protein
Autophagy-related protein 29 dimer, 20 kDa Kluyveromyces lactis protein
KLLA0A10637p dimer, 32 kDa Kluyveromyces lactis protein
Buffer: 20 mM Tris, 200 mM NaCl, 2% glycerol, pH: 8
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2013 Dec 10
Solution structure of the Atg1 complex: implications for the architecture of the phagophore assembly site. Structure 23(5):809-818 (2015)
Köfinger J, Ragusa MJ, Lee IH, Hummer G, Hurley JH
RgGuinier 10.1 nm
Dmax 34.0 nm
VolumePorod 848 nm3

SASDAL6 – Wild-type chalcone isomerase, ligand-free

Bacterial chalcone isomerase experimental SAS data
Bacterial chalcone isomerase Kratky plot
Sample: Bacterial chalcone isomerase hexamer, 194 kDa Eubacterium ramulus protein
Buffer: 50 mM sodium phosphate, pH: 6.8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Sep 23
Structure and catalytic mechanism of the evolutionarily unique bacterial chalcone isomerase. Acta Crystallogr D Biol Crystallogr 71(Pt 4):907-17 (2015)
Thomsen M, Tuukkanen A, Dickerhoff J, Palm GJ, Kratzat H, Svergun DI, Weisz K, Bornscheuer UT, Hinrichs W
RgGuinier 4.0 nm
Dmax 13.0 nm
VolumePorod 320 nm3