Browse by ORGANISM: Homo sapiens (Human)

SASDDL6 – Calcium Loaded Calbindin-D28K

Calbindin experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Calbindin monomer, 30 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150 mM NaCl, 3 mM CaCl2, pH: 7.8
Experiment: SAXS data collected at B21, Diamond Light Source on 2018 Feb 28
The X-ray structure of human calbindin-D28K: an improved model. Acta Crystallogr D Struct Biol 74(Pt 10):1008-1014 (2018)
Noble JW, Almalki R, Roe SM, Wagner A, Duman R, Atack JR
RgGuinier 2.1 nm
Dmax 7.3 nm
VolumePorod 47 nm3

SASDDM6 – Calbindin-D28K

Calbindin experimental SAS data
DAMMIF model
Sample: Calbindin monomer, 30 kDa Homo sapiens protein
Buffer: 20 mM Tris, 150mM NaCl, pH: 7.8
Experiment: SAXS data collected at B21, Diamond Light Source on 2018 Feb 28
The X-ray structure of human calbindin-D28K: an improved model. Acta Crystallogr D Struct Biol 74(Pt 10):1008-1014 (2018)
Noble JW, Almalki R, Roe SM, Wagner A, Duman R, Atack JR
RgGuinier 2.1 nm
Dmax 7.0 nm
VolumePorod 46 nm3

SASDDR9 – NADPH oxidase (H2O2 producing and [F-actin] oxidizing) MICAL1 (monomer)

[F-actin]-monooxygenase MICAL1 (monomer) experimental SAS data
CORAL model
Sample: [F-actin]-monooxygenase MICAL1 (monomer) monomer, 118 kDa Homo sapiens protein
Buffer: 50 mM sodium phosphate buffer, pH 7.5, 5 % glycerol, 100 mM NaCl, 1 mM EDTA, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 20
Human MICAL1: activation by the small GTPase Rab8 and small-angle X-ray scattering studies on the oligomerization state of MICAL1 and its complex with Rab8. Protein Sci (2018)
Esposito A, Ventura V, Petoukhov MV, Rai A, Svergun DI, Vanoni MA
RgGuinier 3.7 nm
Dmax 12.1 nm
VolumePorod 212 nm3

SASDDS9 – NADPH oxidase (H2O2 producing and [F-actin] oxidizing) MICAL1 (monomer) (Truncated MOCHLIM construct)

[F-actin]-monooxygenase MICAL1 (MoChLim) experimental SAS data
CORAL model
Sample: [F-actin]-monooxygenase MICAL1 (MoChLim) monomer, 85 kDa Homo sapiens protein
Buffer: 20 mM Hepes/NaOH, pH 7.5, 50 mM NaCl, 2 mM MgCl2, 2 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 20
Human MICAL1: activation by the small GTPase Rab8 and small-angle X-ray scattering studies on the oligomerization state of MICAL1 and its complex with Rab8. Protein Sci (2018)
Esposito A, Ventura V, Petoukhov MV, Rai A, Svergun DI, Vanoni MA
RgGuinier 4.0 nm
Dmax 18.0 nm
VolumePorod 145 nm3

SASDDT9 – NADPH oxidase (H2O2 producing and [F-actin] oxidizing) MICAL1 (monomer) in complex with Ras-related protein Rab 8 (MICAL1-Rab8 complex)

[F-actin]-monooxygenase MICAL1 (monomer)Ras-related protein 8 experimental SAS data
CORAL model
Sample: [F-actin]-monooxygenase MICAL1 (monomer) monomer, 118 kDa Homo sapiens protein
Ras-related protein 8 monomer, 20 kDa protein
Buffer: 20 mM Hepes/NaOH, pH 7.5, 50 mM NaCl, 2 mM MgCl2, 2 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Jun 20
Human MICAL1: activation by the small GTPase Rab8 and small-angle X-ray scattering studies on the oligomerization state of MICAL1 and its complex with Rab8. Protein Sci (2018)
Esposito A, Ventura V, Petoukhov MV, Rai A, Svergun DI, Vanoni MA
RgGuinier 3.7 nm
Dmax 11.8 nm
VolumePorod 234 nm3

SASDDU9 – NADPH oxidase (H2O2 producing and [F-actin] oxidizing) MICAL1 (monomer) (Truncated MOCH construct)

[F-actin]-monooxygenase MICAL1 (MoCh) experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: [F-actin]-monooxygenase MICAL1 (MoCh) monomer, 67 kDa Homo sapiens protein
Buffer: 50 mM sodium phosphate buffer, 5 % glycerol, 100 mM NaCl, 1 mM EDTA, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Jun 6
Human MICAL1: activation by the small GTPase Rab8 and small-angle X-ray scattering studies on the oligomerization state of MICAL1 and its complex with Rab8. Protein Sci (2018)
Esposito A, Ventura V, Petoukhov MV, Rai A, Svergun DI, Vanoni MA
RgGuinier 3.4 nm
Dmax 12.0 nm
VolumePorod 100 nm3

SASDD66 – Phox homologue (PX) - C2 domains of human phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha (PI3KC2α)

Phox Homology (PX) - C2 domains of human Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha experimental SAS data
DAMFILT model
Sample: Phox Homology (PX) - C2 domains of human Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha monomer, 33 kDa Homo sapiens protein
Buffer: 25 mM Tris 200 mM NaCl 5% Glycerol 0.5 mM TCEP, pH: 8.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2017 Oct 20
Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2α. Structure (2018)
Chen KE, Tillu VA, Chandra M, Collins BM
RgGuinier 2.6 nm
Dmax 9.3 nm
VolumePorod 43 nm3

SASDD76 – Phox Homologue (PX) - C2 domains of human phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha (PI3KC2α) in complex with inositol-hexaphosphate (IP6)

Phox Homology (PX) - C2 domains of human Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha experimental SAS data
DAMFILT model
Sample: Phox Homology (PX) - C2 domains of human Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha monomer, 33 kDa Homo sapiens protein
Buffer: 25 mM Tris 200 mM NaCl 5% Glycerol 0.5 mM TCEP 4 mM InsP6, pH: 8.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2017 Oct 20
Molecular Basis for Membrane Recruitment by the PX and C2 Domains of Class II Phosphoinositide 3-Kinase-C2α. Structure (2018)
Chen KE, Tillu VA, Chandra M, Collins BM
RgGuinier 2.6 nm
Dmax 9.3 nm
VolumePorod 48 nm3

SASDD29 – Low load concentration of apo alpha-aminoadipic semialdehyde dehydrogenase (ALDH7A1) collected by SEC-SAXS

Alpha-aminoadipic semialdehyde dehydrogenase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Alpha-aminoadipic semialdehyde dehydrogenase tetramer, 222 kDa Homo sapiens protein
Buffer: 50 mM Tris, 50 mM NaCl, 0.5 mM DTT, 5% (v/v) glycerol, pH: 7.8
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2018 Feb 22
NAD+ Promotes Assembly of the Active Tetramer of Aldehyde Dehydrogenase 7A1. FEBS Lett (2018)
Korasick DA, White TA, Chakravarthy S, Tanner JJ
RgGuinier 3.5 nm
VolumePorod 212 nm3

SASDD39 – Medium load concentration of apo alpha-aminoadipic semialdehyde dehydrogenase (ALDH7A1) collected by SEC-SAXS

Alpha-aminoadipic semialdehyde dehydrogenase experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Alpha-aminoadipic semialdehyde dehydrogenase tetramer, 222 kDa Homo sapiens protein
Buffer: 50 mM Tris, 50 mM NaCl, 0.5 mM DTT, 5% (v/v) glycerol, pH: 7.8
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2018 Feb 22
NAD+ Promotes Assembly of the Active Tetramer of Aldehyde Dehydrogenase 7A1. FEBS Lett (2018)
Korasick DA, White TA, Chakravarthy S, Tanner JJ
RgGuinier 3.7 nm
VolumePorod 229 nm3