Browse by ORGANISM: other species

SASDSW2 – spikemoss tandem zinc finger (TZF) domain, pH 8 at 4.1 mg/mL

C3H1-type domain-containing protein experimental SAS data
C3H1-type domain-containing protein Kratky plot
Sample: C3H1-type domain-containing protein monomer, 8 kDa Selaginella moellendorffii protein
Buffer: 20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Nov 9
Solution scattering of the tandem zinc finger (TZF) domain from the tristetraprolin (TTP) family member found in Selaginella moellendorffii (spikemoss) in the presence and absence of 9-mer RNA
Stephanie Hicks
RgGuinier 1.7 nm
Dmax 7.1 nm
VolumePorod 14 nm3

SASDSX2 – spikemoss tandem zinc finger (TZF) domain, pH 8 at 2.75 mg/mL

C3H1-type domain-containing protein experimental SAS data
C3H1-type domain-containing protein Kratky plot
Sample: C3H1-type domain-containing protein monomer, 8 kDa Selaginella moellendorffii protein
Buffer: 20 mM sodium phosphate, 100 mM KCl, 25 µM ZnSO4, 2 mM β-mercaptoethanol, 5 % glycerol, pH: 8
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Nov 9
Solution scattering of the tandem zinc finger (TZF) domain from the tristetraprolin (TTP) family member found in Selaginella moellendorffii (spikemoss) in the presence and absence of 9-mer RNA
Stephanie Hicks
RgGuinier 1.7 nm
Dmax 7.1 nm
VolumePorod 14 nm3

SASDU59 – BC120 RNA

BC120 RNA monomer experimental SAS data
DAMMIN model
Sample: BC120 RNA monomer monomer, 39 kDa RNA
Buffer: phosphate buffered saline, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 Sep 22
Alu RNA pseudoknot alterations influence SRP9/SRP14 association. RNA (2025)
Gussakovsky D, Brown MJF, Pereira HS, Meier M, Padilla-Meier GP, Black NA, Booy EP, Stetefeld J, Patel TR, McKenna SA
RgGuinier 4.0 nm
Dmax 14.3 nm
VolumePorod 57 nm3

SASDU69 – EB120 RNA

EB120 RNA monomer experimental SAS data
DAMMIN model
Sample: EB120 RNA monomer monomer, 39 kDa RNA
Buffer: phosphate buffered saline, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 Sep 22
Alu RNA pseudoknot alterations influence SRP9/SRP14 association. RNA (2025)
Gussakovsky D, Brown MJF, Pereira HS, Meier M, Padilla-Meier GP, Black NA, Booy EP, Stetefeld J, Patel TR, McKenna SA
RgGuinier 4.2 nm
Dmax 13.6 nm
VolumePorod 79 nm3

SASDT97 – Ustilago maydis Jps1 protein

Uncharacterized protein experimental SAS data
CORAL model
Sample: Uncharacterized protein dimer, 122 kDa Ustilago maydis (strain … protein
Buffer: 20mM HEPES, 20 mM KCl, 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Oct 25
Specific phosphoinositide interaction of Jps1 is a key feature during unconventional secretion in Ustilago maydis Journal of Biological Chemistry :110215 (2025)
Dali S, Schultz M, Köster M, Kamel M, Busch M, Steinchen W, Hänsch S, Papadopoulos A, Reiners J, Smits S, Kedrov A, Altegoer F, Schipper K
RgGuinier 4.0 nm
Dmax 14.7 nm
VolumePorod 254 nm3

SASDRK9 – single self-amplifying RNA

self-amplifying RNA experimental SAS data
DAMMIF model
Sample: Self-amplifying RNA monomer, 3030 kDa RNA
Buffer: MBG buffer: 5% w/v D-Glucose, 10mM MES (2-(N-morpholino)ethanesulfonic acid) in double distillated sterile/RNAse free water, pH: 6.1
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Nov 10
Compact polyethylenimine-complexed mRNA molecules as quintessential vaccines
Martin Schroer
RgGuinier 90.5 nm
Dmax 200.0 nm

SASDRL9 – single self-amplifying RNA + 50 mM NaCl

self-amplifying RNA experimental SAS data
DAMMIF model
Sample: Self-amplifying RNA monomer, 3030 kDa RNA
Buffer: MBG buffer: 5% w/v D-Glucose, 10mM MES (2-(N-morpholino)ethanesulfonic acid) in double distillated sterile/RNAse free water, pH: 6.1
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Mar 10
Compact polyethylenimine-complexed mRNA molecules as quintessential vaccines
Martin Schroer
RgGuinier 30.7 nm
Dmax 107.4 nm
VolumePorod 112000 nm3

SASDRM9 – Polyethylenimine-compacted single self-amplifying RNA for prophylactic and therapeutic application, specifically for vaccination

self-amplifying RNAlinear polyethylenimine experimental SAS data
DAMMIF model
Sample: Self-amplifying RNA monomer, 3030 kDa RNA
Linear polyethylenimine monomer, 25 kDa none (polymer)
Buffer: MBG buffer: 5% w/v D-Glucose, 10mM MES (2-(N-morpholino)ethanesulfonic acid) in double distillated sterile/RNAse free water, pH: 6.1
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Nov 10
Compact polyethylenimine-complexed mRNA molecules as quintessential vaccines
Martin Schroer
RgGuinier 12.0 nm
Dmax 40.0 nm
VolumePorod 9100 nm3

SASDSC7 – Human immunoglobulin gamma 2 (IgG2) ChiLob 7/4 F(ab')2 - heavy chain T219C/C224S kappa chain E123C/C214S

Human immunoglobulin gamma 2 (IgG2) ChiLob 7/4 F(ab')2 - heavy chain T219C/C224SHuman immunoglobulin gamma 2 (IgG2) ChiLob 7/4 F(ab')2 - kappa chain E123C/C214S experimental SAS data
Human immunoglobulin gamma 2 (IgG2) ChiLob 7/4 F(ab')2 - heavy chain T219C/C224S kappa chain E123C/C214S Rg histogram
Sample: Human immunoglobulin gamma 2 (IgG2) ChiLob 7/4 F(ab')2 - heavy chain T219C/C224S dimer, 52 kDa protein
Human immunoglobulin gamma 2 (IgG2) ChiLob 7/4 F(ab')2 - kappa chain E123C/C214S dimer, 47 kDa protein
Buffer: 50 mM HEPES, 150 mM KCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2022 Apr 12
Structure-guided disulfide engineering restricts antibody conformation to elicit TNFR agonism. Nat Commun 16(1):3495 (2025)
Elliott IG, Fisher H, Chan HTC, Inzhelevskaya T, Mockridge CI, Penfold CA, Duriez PJ, Orr CM, Herniman J, Müller KTJ, Essex JW, Cragg MS, Tews I
RgGuinier 3.9 nm
Dmax 13.2 nm
VolumePorod 124 nm3

SASDW97 – Recombination directionality factor (6H-RdfS) from M.japonicum bound to 40mer DNA

Recombination directionality factor RdfSattP_8 40-mer DNA experimental SAS data
OTHER model
Sample: Recombination directionality factor RdfS tetramer, 52 kDa Mesorhizobium japonicum R7A protein
AttP_8 40-mer DNA dimer, 25 kDa DNA
Buffer: 150 mM Tris-HCl, 300 mM NaCl, 5% v/v glycerol, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Jun 19
Structural basis for control of integrative and conjugative element excision and transfer by the oligomeric winged helix–turn–helix protein RdfS Nucleic Acids Research 53(6) (2025)
Verdonk C, Agostino M, Eto K, Hall D, Bond C, Ramsay J
RgGuinier 3.8 nm
Dmax 13.8 nm
VolumePorod 134 nm3