Browse by ORGANISM: other species

SASDNE3 – Lectin nano-block hexamer of WA20-SL-ACG

Lectin nano-block WA20-SL-ACG experimental SAS data
CORAL model
Sample: Lectin nano-block WA20-SL-ACG hexamer, 181 kDa protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 20
Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
Irumagawa S, Hiemori K, Saito S, Tateno H, Arai R
RgGuinier 5.4 nm
Dmax 24.2 nm
VolumePorod 313 nm3

SASDNF3 – Lectin nano-block dimer of WA20-H-ACG

Lectin nano-block WA20-H-ACG experimental SAS data
DAMMIN model
Sample: Lectin nano-block WA20-H-ACG dimer, 59 kDa protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Oct 31
Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
Irumagawa S, Hiemori K, Saito S, Tateno H, Arai R
RgGuinier 3.9 nm
Dmax 18.1 nm
VolumePorod 85 nm3

SASDNG3 – Lectin nano-block dimer of WA20-ΔN3ACG

Lectin nano-block WA20-ΔN3ACG experimental SAS data
DAMMIN model
Sample: Lectin nano-block WA20-ΔN3ACG dimer, 58 kDa protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Oct 31
Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
Irumagawa S, Hiemori K, Saito S, Tateno H, Arai R
RgGuinier 4.1 nm
Dmax 21.6 nm
VolumePorod 87 nm3

SASDN52 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 1.7

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' monomer, 14 kDa Achromobacter xylosoxidans protein
Buffer: Phosphate Buffer pD 1.7, pH: 1.7
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 2.3 nm
Dmax 8.6 nm
VolumePorod 13 nm3

SASDN62 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 6.4

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' dimer, 27 kDa Alcaligenes protein
Buffer: Phosphate Buffer pD 6.4, pH: 6.4
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 1.8 nm
Dmax 5.5 nm
VolumePorod 11 nm3

SASDN72 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 9.6

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' dimer, 27 kDa Alcaligenes protein
Buffer: Phosphate Buffer pD 9.6, pH: 9.6
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 1.9 nm
Dmax 5.3 nm
VolumePorod 10 nm3

SASDN82 – SANS data from cytochrome c' from Alcaligenes xylosoxidans at pD = 13

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' monomer, 14 kDa Achromobacter xylosoxidans protein
Buffer: Phosphate Buffer pD 13, pH: 13
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 4.8 nm
Dmax 9.0 nm
VolumePorod 20 nm3

SASDLP2 – Outer membrane associated protein, FopA dimer in Tris-HCl, NaCl and n-Dodecyl beta-D-maltoside

Francisella tularensis outer membrane protein A experimental SAS data
Sample: Francisella tularensis outer membrane protein A dimer, 80 kDa Francisella tularensis subsp. … protein
Buffer: 20 mM Tris, 150 mM NaCl, 0.05% B-DDM, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2019 Mar 20
Structural and biophysical properties of FopA, a major outer membrane protein of Francisella tularensis. PLoS One 17(8):e0267370 (2022)
Nagaratnam N, Martin-Garcia JM, Yang JH, Goode MR, Ketawala G, Craciunescu FM, Zook JD, Sonowal M, Williams D, Grant TD, Fromme R, Hansen DT, Fromme P
RgGuinier 4.4 nm
Dmax 16.0 nm
VolumePorod 330 nm3

SASDMK7 – HomA outer membrane protein

HomA outer membrane protein experimental SAS data
DAMMIN model
Sample: HomA outer membrane protein dimer, 146 kDa Helicobacter pylori protein
Buffer: 20 mM Tris-Cl, 200 mM NaCl, 5 mM β-mercaptoethanol, pH: 8
Experiment: SAXS data collected at BL-18, INDUS-2 on 2021 Feb 2
Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori. Sci Rep 11(1):24471 (2021)
Tamrakar A, Singh R, Kumar A, Makde RD, Ashish, Kodgire P
RgGuinier 8.3 nm
Dmax 28.2 nm
VolumePorod 426 nm3

SASDML7 – HomB outer membrane protein

HomB outer membrane protein experimental SAS data
DAMMIN model
Sample: HomB outer membrane protein dimer, 148 kDa Helicobacter pylori protein
Buffer: 20 mM Tris-Cl, 200 mM NaCl, 5 mM β-mercaptoethanol, pH: 8
Experiment: SAXS data collected at BL-18, INDUS-2 on 2021 Feb 2
Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori. Sci Rep 11(1):24471 (2021)
Tamrakar A, Singh R, Kumar A, Makde RD, Ashish, Kodgire P
RgGuinier 8.2 nm
Dmax 27.1 nm
VolumePorod 500 nm3