Browse by ORGANISM: other species

SASDMR6 – 5-10-5 gapmer phosphorothioate antisense oligonucleotide

5-10-5 gapmer phosphorothioate antisense oligonucleotide experimental SAS data
DAMFILT model
Sample: 5-10-5 gapmer phosphorothioate antisense oligonucleotide dimer, 14 kDa
Buffer: 20 mM Tris-Cl (pH 7.5), 250 mM KCl, 50 mM L-proline, 0.5 mM EDTA, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Apr 28
Structural basis of dimerization and nucleic acid binding of human DBHS proteins NONO and PSPC1. Nucleic Acids Res (2021)
Knott GJ, Chong YS, Passon DM, Liang XH, Deplazes E, Conte MR, Marshall AC, Lee M, Fox AH, Bond CS
RgGuinier 1.8 nm
Dmax 8.5 nm
VolumePorod 15 nm3

SASDKW7 – Complement inhibitory domain of the Borrelia burgdorferi fibronectin-binding protein BBK32

Fibronectin-binding protein BBK32 experimental SAS data
PYMOL model
Sample: Fibronectin-binding protein BBK32 monomer, 17 kDa Borreliella burgdorferi B31 protein
Buffer: 10 mM HEPES, 140 mM NaCl, pH: 7.3
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2020 Sep 24
A Structural Basis for Inhibition of the Complement Initiator Protease C1r by Lyme Disease Spirochetes. J Immunol 207(11):2856-2867 (2021)
Garrigues RJ, Powell-Pierce AD, Hammel M, Skare JT, Garcia BL
RgGuinier 2.1 nm
Dmax 7.6 nm
VolumePorod 34 nm3

SASDEX9 – Class II pyruvate aldolase (HpcH/HpaI aldolase), wild-type hexamer in HEPES isolated using SEC-SAXS

HpcH/HpaI aldolase experimental SAS data
GASBOR model
Sample: HpcH/HpaI aldolase hexamer, 165 kDa Rhizorhabdus wittichii RW1 protein
Buffer: 20 mM HEPES,, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Nov 23
EFAMIX , a tool to decompose inline chromatography SAXS data from partially overlapping components Protein Science (2021)
Konarev P, Graewert M, Jeffries C, Fukuda M, Cheremnykh T, Volkov V, Svergun D
RgGuinier 3.3 nm
Dmax 9.4 nm
VolumePorod 233 nm3

SASDKU3 – II-III-VI three-way junction from the Neurospora Varkud Satellite (VS) ribozyme

Neurospora Varkud Satellite ribozyme junction II-III-VI experimental SAS data
OTHER model
Sample: Neurospora Varkud Satellite ribozyme junction II-III-VI monomer, 20 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2014 Oct 29
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 2.2 nm
Dmax 7.7 nm
VolumePorod 28 nm3

SASDKV3 – III-IV-V three-way junction from the Neurospora Varkud Satellite (VS) ribozyme

Neurospora Varkud Satellite ribozyme junction III-IV-V experimental SAS data
OTHER model
Sample: Neurospora Varkud Satellite ribozyme junction III-IV-V monomer, 15 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2014 Oct 29
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 2.1 nm
Dmax 7.5 nm
VolumePorod 20 nm3

SASDKW3 – Stem-loop VI from the Neurospora Varkud Satellite (VS) ribozyme

Neurospora Varkud Satellite ribozyme stem-loop VI experimental SAS data
OTHER model
Sample: Neurospora Varkud Satellite ribozyme stem-loop VI monomer, 8 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at G1, Cornell High Energy Synchrotron Source (CHESS) on 2015 Jul 7
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 1.6 nm
Dmax 6.1 nm
VolumePorod 8 nm3

SASDKX3 – Minimal trans Varkud Satellite (VS) ribozyme without MgCl2

Neurospora Varkud Satellite minimal trans ribozyme experimental SAS data
Neurospora Varkud Satellite minimal trans ribozyme Kratky plot
Sample: Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, pH: 6.5
Experiment: SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 3.6 nm
Dmax 12.4 nm
VolumePorod 55 nm3

SASDKY3 – Minimal trans Varkud Satellite (VS) ribozyme in 5mM MgCl2

Neurospora Varkud Satellite minimal trans ribozyme experimental SAS data
OTHER model
Sample: Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 5 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 3.0 nm
Dmax 11.0 nm
VolumePorod 44 nm3

SASDKZ3 – Minimal trans Varkud Satellite (VS) ribozyme in 20mM MgCl2

Neurospora Varkud Satellite minimal trans ribozyme experimental SAS data
Neurospora Varkud Satellite minimal trans ribozyme Kratky plot
Sample: Neurospora Varkud Satellite minimal trans ribozyme monomer, 33 kDa Neurospora crassa RNA
Buffer: 50 mM MES, 50 mM KCl, 20 mM MgCl2,, pH: 6.5
Experiment: SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Sep 19
An integrative NMR-SAXS approach for structural determination of large RNAs defines the substrate-free state of a trans -cleaving Neurospora Varkud Satellite ribozyme Nucleic Acids Research (2021)
Dagenais P, Desjardins G, Legault P
RgGuinier 3.5 nm
Dmax 11.4 nm
VolumePorod 61 nm3

SASDJ69 – Sensory rhodopsin II - transducer complex (NpSRII/NpHtrII) in detergent at 150 mM NaCl studied with SAXS

Sensory rhodopsin II from Natronbacterium pharaonisSensory rhodopsin II transducer from Natronomonas pharaonis experimental SAS data
MEMPROT model
Sample: Sensory rhodopsin II from Natronbacterium pharaonis dimer, 53 kDa Natronomonas pharaonis protein
Sensory rhodopsin II transducer from Natronomonas pharaonis dimer, 116 kDa Natronomonas pharaonis protein
Buffer: 150 mM NaCl, 25 mM Na/Na-Pi, 1.0 mM EDTA, 0.05% DDM, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2018 Dec 8
Ambiguities in and completeness of SAS data analysis of membrane proteins: the case of the sensory rhodopsin II–transducer complex Acta Crystallographica Section D Structural Biology 77(11) (2021)
Ryzhykau Y, Vlasov A, Orekhov P, Rulev M, Rogachev A, Vlasova A, Kazantsev A, Verteletskiy D, Skoi V, Brennich M, Pernot P, Murugova T, Gordeliy V, Kuklin A
RgGuinier 7.6 nm
Dmax 41.0 nm