Browse by ORGANISM: other species

SASDJD4 – Bacteriorhodopsin solubilized in contrast-matched octyl glucoside

Bacteriorhodopsin experimental SAS data
Bacteriorhodopsin Kratky plot
Sample: Bacteriorhodopsin monomer, 27 kDa Halobacterium salinarum protein
Buffer: 25 mM NaH2PO4, 1.35 mM KOH, 40 mM partially-deuterated octyl glucoside mixture, pH: 5.6
Experiment: SANS data collected at NGB 30m SANS, NIST Center for High Resolution Neutron Scattering (CHRNS) on 2017 Jan 20
Direct localization of detergents and bacteriorhodopsin in the lipidic cubic phase by small-angle neutron scattering IUCrJ 8(1) (2021)
Cleveland IV T, Blick E, Krueger S, Leung A, Darwish T, Butler P
RgGuinier 2.7 nm
Dmax 5.4 nm
VolumePorod 68 nm3

SASDJE4 – Bacteriorhodopsin in contrast-matched lipidic cubic phase formed with deuterated monoolein

Bacteriorhodopsin experimental SAS data
Bacteriorhodopsin Kratky plot
Sample: Bacteriorhodopsin monomer, 27 kDa Halobacterium salinarum protein
Buffer: 25 mM NaH2PO4, 1.35 mM KOH, 40 mM octyl glucoside, pH: 5.6
Experiment: SANS data collected at NG7, NIST Center for High Resolution Neutron Scattering (CHRNS) on 2017 May 15
Direct localization of detergents and bacteriorhodopsin in the lipidic cubic phase by small-angle neutron scattering IUCrJ 8(1) (2021)
Cleveland IV T, Blick E, Krueger S, Leung A, Darwish T, Butler P
RgGuinier 2.7 nm
Dmax 6.2 nm
VolumePorod 49 nm3

SASDJN5 – Isolated translocation domain of tetanus nerotoxin (TeNT/iHn)

Tetanus toxin (C467S) experimental SAS data
Isolated translocation domain of tetanus nerotoxin (TeNT/iHn) Rg histogram
Sample: Tetanus toxin (C467S) monomer, 46 kDa Clostridium tetani protein
Buffer: 10 mM HEPES 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL45XU, SPring-8 on 2018 Oct 20
Structural flexibility of the tetanus neurotoxin revealed by crystallographic and solution scattering analyses. J Struct Biol X 5:100045 (2021)
Zhang CM, Imoto Y, Hikima T, Inoue T
RgGuinier 3.0 nm
Dmax 12.1 nm
VolumePorod 54 nm3

SASDJP5 – Beltless isolated translocation domain of tetanus nerotoxin (TeNT/blHn)

Tetanus toxin experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Tetanus toxin monomer, 35 kDa Clostridium tetani protein
Buffer: 10 mM HEPES 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL45XU, SPring-8 on 2018 Oct 20
Structural flexibility of the tetanus neurotoxin revealed by crystallographic and solution scattering analyses. J Struct Biol X 5:100045 (2021)
Zhang CM, Imoto Y, Hikima T, Inoue T
RgGuinier 2.9 nm
Dmax 11.3 nm
VolumePorod 42 nm3

SASDK82 – Full-length nonstructural protein 2 (nsP2) of Chikungunya virus (CHIKV)

NsP2 protein experimental SAS data
CORAL model
Sample: NsP2 protein monomer, 90 kDa Chikungunya virus protein
Buffer: 20 mM Hepes pH 7.4, 150 mM NaCl, 1 mM DTT, 5% glycerol, pH: 7.4
Experiment: SAXS data collected at 23A, Taiwan Photon Source, NSRRC on 2019 Aug 10
Inter-domain Flexibility of Chikungunya Virus nsP2 Helicase-Protease Differentially Influences Viral RNA Replication and Infectivity. J Virol (2020)
Law YS, Wang S, Tan YB, Shih O, Utt A, Goh WY, Lian BJ, Chen MW, Jeng US, Merits A, Luo D
RgGuinier 3.9 nm
Dmax 12.0 nm
VolumePorod 134 nm3

SASDJK9 – M100 DNA oligonucleotide

M100 oligonucleotide experimental SAS data
MONSA model
Sample: M100 oligonucleotide monomer, 12 kDa DNA
Buffer: 20 mM sodium phosphate monobasic/dibasic, 100 mM NaCl, 1 mM DTT, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2018 Nov 2
Contrasting DNA-binding behaviour by ISL1 and LHX3 underpins differential gene targeting in neuronal cell specification Journal of Structural Biology: X :100043 (2020)
Smith N, Wilkinson-White L, Kwan A, Trewhella J, Matthews J
RgGuinier 1.9 nm
Dmax 6.8 nm
VolumePorod 15 nm3

SASDJG5 – SARS-CoV-2 Main Protease

3C-like proteinase from SARS-CoV-2 replicase polyprotein 1a experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: 3C-like proteinase from SARS-CoV-2 replicase polyprotein 1a dimer, 68 kDa Severe acute respiratory … protein
Buffer: 50 mM Tris, 1 mM DTT, 1 mM EDTA, pH: 7.4
Experiment: SAXS data collected at Rigaku BioSAXS-2000, University of British Columbia on 2020 Jun 1
Crystallographic structure of wild-type SARS-CoV-2 main protease acyl-enzyme intermediate with physiological C-terminal autoprocessing site. Nat Commun 11(1):5877 (2020)
Lee J, Worrall LJ, Vuckovic M, Rosell FI, Gentile F, Ton AT, Caveney NA, Ban F, Cherkasov A, Paetzel M, Strynadka NCJ
RgGuinier 2.7 nm
Dmax 8.8 nm
VolumePorod 93 nm3

SASDJH5 – SARS-CoV-2 Main Protease, P9T mutant

3C-like proteinase from SARS-CoV-2 replicase polyprotein 1a, PT9 mutant experimental SAS data
SREFLEX model
Sample: 3C-like proteinase from SARS-CoV-2 replicase polyprotein 1a, PT9 mutant monomer, 34 kDa Severe acute respiratory … protein
Buffer: 50 mM Tris, 1 mM DTT, 1 mM EDTA, pH: 7.4
Experiment: SAXS data collected at Rigaku BioSAXS-2000, University of British Columbia on 2020 Jun 1
Crystallographic structure of wild-type SARS-CoV-2 main protease acyl-enzyme intermediate with physiological C-terminal autoprocessing site. Nat Commun 11(1):5877 (2020)
Lee J, Worrall LJ, Vuckovic M, Rosell FI, Gentile F, Ton AT, Caveney NA, Ban F, Cherkasov A, Paetzel M, Strynadka NCJ
RgGuinier 2.4 nm
Dmax 7.2 nm
VolumePorod 54 nm3

SASDHG6 – N-terminal engineered, disulfide-containing endo-beta-N-acetylglucosaminidase H at 36.3 Gy X-ray dose (J/kg)

Endo-beta-N-acetylglucosaminidase H experimental SAS data
Endo-beta-N-acetylglucosaminidase H Kratky plot
Sample: Endo-beta-N-acetylglucosaminidase H dimer, 61 kDa Streptomyces plicatus protein
Buffer: 20 mM Tris-HCl, 50 mM NaCl, 5 mM EDTA, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Nov 4
SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique PLOS ONE 15(11):e0239702 (2020)
Stachowski T, Snell M, Snell E, Boggon T
RgGuinier 3.0 nm
VolumePorod 69 nm3

SASDHH6 – N-terminal engineered, disulfide-containing endo-beta-N-acetylglucosaminidase H at 72.6 Gy X-ray dose (J/kg)

Endo-beta-N-acetylglucosaminidase H experimental SAS data
Endo-beta-N-acetylglucosaminidase H Kratky plot
Sample: Endo-beta-N-acetylglucosaminidase H dimer, 61 kDa Streptomyces plicatus protein
Buffer: 20 mM Tris-HCl, 50 mM NaCl, 5 mM EDTA, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Nov 4
SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique PLOS ONE 15(11):e0239702 (2020)
Stachowski T, Snell M, Snell E, Boggon T
RgGuinier 3.1 nm
VolumePorod 68 nm3