Browse by ORGANISM: other species

SASDGY3 – 3'SL from West Nile virus

3'SL from West Nile virus experimental SAS data
DAMMIF model
Sample: 3'SL from West Nile virus monomer, 31 kDa West Nile virus RNA
Buffer: 20mM Tris-HCl, 100mM NaCl, 5mM MgCl2, pH: 7.5
Experiment: SAXS data collected at BL19U2, Shanghai Synchrotron Radiation Facility (SSRF) on 2017 Apr 7
Long non-coding subgenomic flavivirus RNAs have extended 3D structures and are flexible in solution. EMBO Rep 20(11):e47016 (2019)
Zhang Y, Zhang Y, Liu ZY, Cheng ML, Ma J, Wang Y, Qin CF, Fang X
RgGuinier 3.5 nm
Dmax 13.2 nm
VolumePorod 39 nm3

SASDGZ3 – Subgenomic flavivirus RNAs from Zika virus

Subgenomic flavivirus RNA from Zika virus experimental SAS data
Subgenomic flavivirus RNAs from Zika virus Rg histogram
Sample: Subgenomic flavivirus RNA from Zika virus monomer, 133 kDa Zika virus RNA
Buffer: 20mM Tris-HCl, 100mM NaCl, 5mM MgCl2, pH: 7.5
Experiment: SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2017 Mar 13
Long non-coding subgenomic flavivirus RNAs have extended 3D structures and are flexible in solution. EMBO Rep 20(11):e47016 (2019)
Zhang Y, Zhang Y, Liu ZY, Cheng ML, Ma J, Wang Y, Qin CF, Fang X
RgGuinier 7.5 nm
Dmax 29.6 nm
VolumePorod 230 nm3

SASDG24 – Subgenomic flavivirus RNAs from Dengue virus 2

Subgenomic flavivirus RNAs from Dengue virus 2 experimental SAS data
Subgenomic flavivirus RNAs from Dengue virus 2 Rg histogram
Sample: Subgenomic flavivirus RNAs from Dengue virus 2 monomer, 137 kDa Dengue virus 2 RNA
Buffer: 20mM Tris-HCl, 100mM NaCl, 5mM MgCl2, pH: 7.5
Experiment: SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2016 Dec 16
Long non-coding subgenomic flavivirus RNAs have extended 3D structures and are flexible in solution. EMBO Rep 20(11):e47016 (2019)
Zhang Y, Zhang Y, Liu ZY, Cheng ML, Ma J, Wang Y, Qin CF, Fang X
RgGuinier 7.9 nm
Dmax 30.5 nm
VolumePorod 236 nm3

SASDG34 – Subgenomic flavivirus RNAs from West nile virus

Subgenomic flavivirus RNAs from West nile virus experimental SAS data
Subgenomic flavivirus RNAs from West nile virus Rg histogram
Sample: Subgenomic flavivirus RNAs from West nile virus monomer, 170 kDa West Nile virus RNA
Buffer: 20mM Tris-HCl, 100mM NaCl, 5mM MgCl2, pH: 7.5
Experiment: SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2017 Mar 13
Long non-coding subgenomic flavivirus RNAs have extended 3D structures and are flexible in solution. EMBO Rep 20(11):e47016 (2019)
Zhang Y, Zhang Y, Liu ZY, Cheng ML, Ma J, Wang Y, Qin CF, Fang X
RgGuinier 7.9 nm
Dmax 31.8 nm
VolumePorod 261 nm3

SASDC68 – Surface presentation of antigens protein, SpaOc

Surface presentation of antigens protein SpaO SpaO(SPOA2) experimental SAS data
Surface presentation of antigens protein SpaO SpaO(SPOA2) Kratky plot
Sample: Surface presentation of antigens protein SpaO SpaO(SPOA2) dimer, 25 kDa Salmonella enterica subsp. … protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Apr 24
Molecular Organization of Soluble Type III Secretion System Sorting Platform Complexes. J Mol Biol 431(19):3787-3803 (2019)
Bernal I, Börnicke J, Heidemann J, Svergun D, Horstmann JA, Erhardt M, Tuukkanen A, Uetrecht C, Kolbe M
RgGuinier 2.5 nm
Dmax 9.1 nm
VolumePorod 51 nm3

SASDC78 – Surface presentation of antigens protein SpaOc-SpaO(SPOA1,2)

Surface presentation of antigens protein SpaO SpaO(SPOA2)Surface presentation of antigens protein SpaO(SPOA1,2) experimental SAS data
Surface presentation of antigens protein SpaO SpaO(SPOA2) Surface presentation of antigens protein SpaO(SPOA1,2) Kratky plot
Sample: Surface presentation of antigens protein SpaO SpaO(SPOA2) dimer, 25 kDa Salmonella enterica subsp. … protein
Surface presentation of antigens protein SpaO(SPOA1,2) monomer, 34 kDa Salmonella enterica subsp. … protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Apr 24
Molecular Organization of Soluble Type III Secretion System Sorting Platform Complexes. J Mol Biol 431(19):3787-3803 (2019)
Bernal I, Börnicke J, Heidemann J, Svergun D, Horstmann JA, Erhardt M, Tuukkanen A, Uetrecht C, Kolbe M
RgGuinier 3.3 nm
Dmax 11.1 nm
VolumePorod 108 nm3

SASDC88 – Surface presentation of antigens protein SpaO(SPOA1,2) N-terminus

Surface presentation of antigens protein SpaO(SPOA1,2) N-terminus experimental SAS data
Surface presentation of antigens protein SpaO(SPOA1,2) N-terminus Kratky plot
Sample: Surface presentation of antigens protein SpaO(SPOA1,2) N-terminus monomer, 17 kDa Salmonella enterica subsp. … protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Apr 24
Molecular Organization of Soluble Type III Secretion System Sorting Platform Complexes. J Mol Biol 431(19):3787-3803 (2019)
Bernal I, Börnicke J, Heidemann J, Svergun D, Horstmann JA, Erhardt M, Tuukkanen A, Uetrecht C, Kolbe M
RgGuinier 1.6 nm
Dmax 5.2 nm
VolumePorod 31 nm3

SASDC98 – Surface presentation of antigens protein SpaOc-SpaO N-terminus

Surface presentation of antigens protein SpaO SpaO(SPOA2)Surface presentation of antigens protein SpaO(SPOA1,2) N-terminus experimental SAS data
Surface presentation of antigens protein SpaO SpaO(SPOA2) Surface presentation of antigens protein SpaO(SPOA1,2) N-terminus Kratky plot
Sample: Surface presentation of antigens protein SpaO SpaO(SPOA2) dimer, 25 kDa Salmonella enterica subsp. … protein
Surface presentation of antigens protein SpaO(SPOA1,2) N-terminus monomer, 17 kDa Salmonella enterica subsp. … protein
Buffer: 20 mM HEPES pH 7.5, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Apr 24
Molecular Organization of Soluble Type III Secretion System Sorting Platform Complexes. J Mol Biol 431(19):3787-3803 (2019)
Bernal I, Börnicke J, Heidemann J, Svergun D, Horstmann JA, Erhardt M, Tuukkanen A, Uetrecht C, Kolbe M
RgGuinier 2.9 nm
Dmax 10.6 nm
VolumePorod 68 nm3

SASDFD7 – Pseudomonas putida CBB5 NdmAB complex - static

Methylxanthine N1-demethylase NdmAMethylxanthine N3-demethylase NdmB experimental SAS data
DAMMIF model
Sample: Methylxanthine N1-demethylase NdmA trimer, 127 kDa Pseudomonas putida protein
Methylxanthine N3-demethylase NdmB trimer, 129 kDa Pseudomonas putida protein
Buffer: 20 mM HEPES 150 mM NaCl 2 mM TCEP 10% v/v glycerol, pH: 7.5
Experiment: SAXS data collected at 4C, Pohang Accelerator Laboratory on 2018 Jul 27
Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex. J Mol Biol 431(19):3647-3661 (2019)
Kim JH, Kim BH, Brooks S, Kang SY, Summers RM, Song HK
RgGuinier 4.5 nm
Dmax 12.3 nm

SASDFE7 – Pseudomonas putida CBB5 mCherry-NdmA/NdmB complex - static

Methylxanthine N1-demethylase NdmAMethylxanthine N3-demethylase NdmB experimental SAS data
DAMMIF model
Sample: Methylxanthine N1-demethylase NdmA trimer, 207 kDa Pseudomonas putida protein
Methylxanthine N3-demethylase NdmB trimer, 129 kDa Pseudomonas putida protein
Buffer: 20 mM HEPES 150 mM NaCl 2 mM TCEP 10% v/v glycerol, pH: 7.5
Experiment: SAXS data collected at 4C, Pohang Accelerator Laboratory on 2018 Jul 27
Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex. J Mol Biol 431(19):3647-3661 (2019)
Kim JH, Kim BH, Brooks S, Kang SY, Summers RM, Song HK
RgGuinier 5.4 nm
Dmax 13.8 nm