Search

  
Advanced search  

20 hits found for Ribose

SASDTB2 – ...Ribose binding protein (16 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.5 nm
Dmax 12.0 nm
VolumePorod 36 nm3

SASDTC2 – ...Ribose binding protein (20 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: ...ribose, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 12.0 nm
VolumePorod 36 nm3

SASDTD2 – ...Ribose binding protein (17 mg/mL) from Escherichia coli in the presence of 5 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: ...ribose, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 1.9 nm
Dmax 10.7 nm
VolumePorod 25 nm3

SASDSJ5 – ...ribose (PAR15) in 100mM NaCl

15mer of adenosine diphosphate ribose (poly-ADP ribose) experimental SAS data
OTHER [STATIC IMAGE] model
Sample: ...ribose (poly-ADP ribose) monomer, 8 kDa synthetic construct
Buffer: 100 mM NaCl, 20 mM Tris-HCl, pH: 7.4
Experiment: SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2022 Apr 21
...ribose). Nat Commun 15(1):7901 (2024)
Wang T, Coshic K, Badiee M, McDonald MR, Aksimentiev A, Pollack L, Leung AKL
RgGuinier 2.4 nm
Dmax 10.0 nm
VolumePorod 15 nm3

SASDSK5 – ...ribose (PAR15) in 100mM NaCl + 1mM MgCl2

15mer of adenosine diphosphate ribose (poly-ADP ribose) experimental SAS data
OTHER [STATIC IMAGE] model
Sample: ...ribose (poly-ADP ribose) monomer, 8 kDa synthetic construct
Buffer: 20 mM Tris-HCl, 1 mM MgCl2, 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at ID7A1 BioSAXS / HP-Bio Beamline, Cornell High Energy Synchrotron Source (CHESS) on 2022 Apr 21
...ribose). Nat Commun 15(1):7901 (2024)
Wang T, Coshic K, Badiee M, McDonald MR, Aksimentiev A, Pollack L, Leung AKL
RgGuinier 2.3 nm
Dmax 9.0 nm
VolumePorod 14 nm3

SASDSL5 – ...ribose (PAR22) in 100mM NaCl

22mer of adenosine diphosphate ribose (poly-ADP ribose) experimental SAS data
OTHER [STATIC IMAGE] model
Sample: ...ribose (poly-ADP ribose) monomer, 12 kDa synthetic construct
Buffer: 100 mM NaCl, 20 mM Tris-HCl, pH: 7.4
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Apr 21
...ribose). Nat Commun 15(1):7901 (2024)
Wang T, Coshic K, Badiee M, McDonald MR, Aksimentiev A, Pollack L, Leung AKL
RgGuinier 3.3 nm
Dmax 14.0 nm
VolumePorod 32 nm3

SASDSM5 – ...ribose (PAR22) in 100mM NaCl + 1mM MgCl2

22mer of adenosine diphosphate ribose (poly-ADP ribose) experimental SAS data
OTHER [STATIC IMAGE] model
Sample: ...ribose (poly-ADP ribose) monomer, 12 kDa synthetic construct
Buffer: 20 mM Tris-HCl, 1 mM MgCl2, 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at 16-ID (LiX), National Synchrotron Light Source II (NSLS-II) on 2022 Apr 21
...ribose). Nat Commun 15(1):7901 (2024)
Wang T, Coshic K, Badiee M, McDonald MR, Aksimentiev A, Pollack L, Leung AKL
RgGuinier 2.6 nm
Dmax 10.5 nm
VolumePorod 21 nm3

SASDTY8 – ...ribose hydrolase

Protein-ADP-ribose hydrolase (D13G, Y23S, T61A, I114S, R177H, I246T) experimental SAS data
ALPHAFOLD model
Sample: ...ribose hydrolase (D13G, Y23S, T61A, I114S, R177H, I246T) monomer, 30 kDa Streptococcus pyogenes serotype … protein
Buffer: 50 mM Tris-HCl, 200 mM NaCl, 1 mM DTT, 5% (v/v) glycerol, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2016 Jul 20
Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains Journal of Biological Chemistry :107770 (2024)
Ariza A, Liu Q, Cowieson N, Ahel I, Filippov D, Rack J
RgGuinier 2.1 nm
Dmax 7.3 nm
VolumePorod 34 nm3

SASDTZ8 – ...ribose hydrolase: glycine cleavage system H-like protein complex

Glycine cleavage system H-like proteinProtein-ADP-ribose hydrolase (D13G, Y23S, T61A, I114S, R177H, I246T) experimental SAS data
ALPHAFOLD model
Sample: Glycine cleavage system H-like protein monomer, 13 kDa Streptococcus pyogenes serotype … protein
...ribose hydrolase (D13G, Y23S, T61A, I114S, R177H, I246T) monomer, 30 kDa Streptococcus pyogenes serotype … protein
Buffer: 50 mM Tris-HCl, 200 mM NaCl, 1 mM DTT, 5% (v/v) glycerol, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2016 Jul 20
Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains Journal of Biological Chemistry :107770 (2024)
Ariza A, Liu Q, Cowieson N, Ahel I, Filippov D, Rack J
RgGuinier 2.4 nm
Dmax 8.4 nm
VolumePorod 53 nm3

SASDSB9 – ...Ribose Binding Protein (9 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.6 nm
VolumePorod 35 nm3

SASDSC9 – ...Ribose Binding Protein (6 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.4 nm
VolumePorod 37 nm3

SASDSD9 – ...Ribose Binding Protein (3 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.3 nm
VolumePorod 39 nm3

SASDSE9 – ...Ribose Binding Protein (9 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: ...ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.0 nm
Dmax 8.3 nm
VolumePorod 35 nm3

SASDXE9 – ...ribose)polymerase 1 (Af-PARP1) apo protein

Aspergillus fumigatus poly(ADP-ribose)polymerase 1 experimental SAS data
Aspergillus fumigatus poly(ADP-ribose)polymerase 1 Kratky plot
Sample: ...ribose)polymerase 1 monomer, 74 kDa Aspergillus fumigatus protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TCEP, 2.5% (v/v) Glycerol, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Nov 14
The BRCT domain enhances DNA binding and catalytic efficiency of fungal PARPs. Nat Commun 17(1) (2026)
Bainbridge AG, Gianga TM, Hussain R, Parkin C, Longhurst AD, Helmstetter N, Farrer RA, Catania S, Siligardi G, Rack JGM
RgGuinier 4.4 nm
Dmax 13.7 nm
VolumePorod 131 nm3

SASDSF9 – ...Ribose Binding Protein (6 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: ...ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.0 nm
Dmax 7.6 nm
VolumePorod 36 nm3

SASDXF9 – ...ribose)polymerase 1 (Af-PARP1) with N-terminal dBRCT domain truncation

Aspergillus fumigatus poly(ADP-ribosyl)polymerase 1 dBRCT experimental SAS data
Aspergillus fumigatus poly(ADP-ribosyl)polymerase 1 dBRCT Kratky plot
Sample: Aspergillus fumigatus poly(ADP-ribosyl)polymerase 1 dBRCT monomer, 58 kDa Aspergillus fumigatus protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TCEP, 2.5% (v/v) Glycerol, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2025 Jul 28
The BRCT domain enhances DNA binding and catalytic efficiency of fungal PARPs. Nat Commun 17(1) (2026)
Bainbridge AG, Gianga TM, Hussain R, Parkin C, Longhurst AD, Helmstetter N, Farrer RA, Catania S, Siligardi G, Rack JGM
RgGuinier 3.2 nm
Dmax 10.9 nm
VolumePorod 111 nm3

SASDSG9 – ...Ribose Binding Protein (3 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: ...ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
...ribose binding protein Data in Brief :109932 (2023)
Choudhury J, Yonezawa K, Anu A, Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 7.4 nm
VolumePorod 39 nm3

SASDXG9 – ...ribose)polymerase 1 (Af-PARP1) 5'P nicked DNA complex

Aspergillus fumigatus poly(ADP-ribose)polymerase 15'Phosphorylated nicked DNA damage mimetic experimental SAS data
Aspergillus fumigatus poly(ADP-ribose)polymerase 1 5'Phosphorylated nicked DNA damage mimetic Kratky plot
Sample: ...ribose)polymerase 1 monomer, 74 kDa Aspergillus fumigatus protein
5'Phosphorylated nicked DNA damage mimetic monomer, 14 kDa DNA
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TCEP, 2.5% (v/v) Glycerol, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Nov 14
The BRCT domain enhances DNA binding and catalytic efficiency of fungal PARPs. Nat Commun 17(1) (2026)
Bainbridge AG, Gianga TM, Hussain R, Parkin C, Longhurst AD, Helmstetter N, Farrer RA, Catania S, Siligardi G, Rack JGM
RgGuinier 4.3 nm
Dmax 16.6 nm
VolumePorod 190 nm3

SASDXH9 – ...ribose)polymerase 1 (Af-PARP1) with N-terminal dBRCT domain truncation:5'P nicked DNA complex

Aspergillus fumigatus poly(ADP-ribosyl)polymerase 1 dBRCT5'Phosphorylated nicked DNA damage mimetic experimental SAS data
Aspergillus fumigatus poly(ADP-ribosyl)polymerase 1 dBRCT 5'Phosphorylated nicked DNA damage mimetic Kratky plot
Sample: Aspergillus fumigatus poly(ADP-ribosyl)polymerase 1 dBRCT monomer, 58 kDa Aspergillus fumigatus protein
5'Phosphorylated nicked DNA damage mimetic monomer, 14 kDa DNA
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TCEP, 2.5% (v/v) Glycerol, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Nov 14
The BRCT domain enhances DNA binding and catalytic efficiency of fungal PARPs. Nat Commun 17(1) (2026)
Bainbridge AG, Gianga TM, Hussain R, Parkin C, Longhurst AD, Helmstetter N, Farrer RA, Catania S, Siligardi G, Rack JGM
RgGuinier 3.5 nm
Dmax 11.4 nm
VolumePorod 151 nm3

SASDVP9 – ...ribose] polymerase RCD1-RST (499-572) from A.thaliana at pH 7.0

NAC domain-containing protein 46Inactive poly [ADP-ribose] polymerase RCD1 experimental SAS data
NAC domain-containing protein 46 Inactive poly [ADP-ribose] polymerase RCD1 Kratky plot
Sample: NAC domain-containing protein 46 monomer, 18 kDa Arabidopsis thaliana protein
...ribose] polymerase RCD1 monomer, 9 kDa Arabidopsis thaliana protein
Buffer: 20mM Na2HPO4/NaH2PO4, 100mM NaCl, 5mM DTT, pH: 7
Experiment: SAXS data collected at EMBL P12, PETRA III on 2023 Dec 1
Hierarchy in regulator interactions with distant transcriptional activation domains empowers rheostatic regulation Protein Science 34(6) (2025)
Due A, Davey N, Thomasen F, Morffy N, Prestel A, Brakti I, O'Shea C, Strader L, Lindorff‐Larsen K, Skriver K, Kragelund B
RgGuinier 3.8 nm
Dmax 20.6 nm
VolumePorod 38 nm3