Small Angle Scattering Biological Data Bank SASBDB


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31 hits found for Arai

SASDNC3 – Lectin nano-block dimer of WA20-SL-ACG

Lectin nano-block WA20-SL-ACG experimental SAS data

Sample:	Lectin nano-block WA20-SL-ACG dimer, 60 kDa protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 20

Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
...Arai R

R_g^Guinier	3.1	nm
D_max	14.9	nm
Volume^Porod	82	nm³

SASDND3 – Lectin nano-block tetramer of WA20-SL-ACG

Sample:	Lectin nano-block WA20-SL-ACG tetramer, 121 kDa protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 20

Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
...Arai R

R_g^Guinier	4.7	nm
D_max	18.6	nm
Volume^Porod	183	nm³

SASDNE3 – Lectin nano-block hexamer of WA20-SL-ACG

Sample:	Lectin nano-block WA20-SL-ACG hexamer, 181 kDa protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 20

Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
...Arai R

R_g^Guinier	5.4	nm
D_max	24.2	nm
Volume^Porod	313	nm³

SASDNF3 – Lectin nano-block dimer of WA20-H-ACG

Lectin nano-block WA20-H-ACG experimental SAS data

Sample:	Lectin nano-block WA20-H-ACG dimer, 59 kDa protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Oct 31

Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
...Arai R

R_g^Guinier	3.9	nm
D_max	18.1	nm
Volume^Porod	85	nm³

SASDNG3 – Lectin nano-block dimer of WA20-ΔN3ACG

Lectin nano-block WA20-ΔN3ACG experimental SAS data

Sample:	Lectin nano-block WA20-ΔN3ACG dimer, 58 kDa protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Oct 31

Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
...Arai R

R_g^Guinier	4.1	nm
D_max	21.6	nm
Volume^Porod	87	nm³

SASDHW3 – Binary-patterned 4-helix bundle de novo protein WA20

De novo protein WA20 experimental SAS data

Sample:	De novo protein WA20 dimer, 25 kDa de novo protein protein
Buffer:	20 mM HEPES, 100 mM NaCl, 200 mM ArgHCl, 10% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-6A, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2016 Feb 26

Hyperstable De Novo Protein with a Dimeric Bisecting Topology. ACS Synth Biol (2020)
...Arai R

R_g^Guinier	2.7	nm
D_max	10.0	nm

SASDHX3 – Hyperstable de novo protein Super WA20 (SUWA)

Hyperstable de novo protein Super WA20 experimental SAS data

Sample:	Hyperstable de novo protein Super WA20 dimer, 25 kDa de novo protein protein
Buffer:	20 mM HEPES, 100 mM NaCl, 200 mM ArgHCl, 10% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-6A, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2016 Feb 26

Hyperstable De Novo Protein with a Dimeric Bisecting Topology. ACS Synth Biol (2020)
...Arai R

R_g^Guinier	2.7	nm
D_max	10.0	nm

SASDD46 – Artificially designed de novo protein esPN-Block (HL4) heterocomplex, e1s2 (HL4)

extender PN-Block (HL4)stopper PN-Block (WA20) experimental SAS data

Sample:	extender PN-Block (HL4) monomer, 27 kDa de novo protein protein stopper PN-Block (WA20) dimer, 25 kDa de novo protein protein
Buffer:	20 mM HEPES, 100 mM NaCl, 200 mM ArgHCl, 10% glycerol, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2014 Dec 19

Self-Assembling Supramolecular Nanostructures Constructed from de Novo Extender Protein Nanobuilding Blocks. ACS Synth Biol 7(5):1381-1394 (2018)
...Arai R

R_g^Guinier	3.6	nm
D_max	15.0	nm

SASDD56 – Artificially designed de novo protein esPN-Block (FL4) heterocomplex, e1s2 (FL4)

stopper PN-Block (WA20)extender PN-Block (FL4) experimental SAS data

Sample:	stopper PN-Block (WA20) dimer, 25 kDa de novo protein protein extender PN-Block (FL4) monomer, 27 kDa de novo protein protein
Buffer:	20 mM HEPES, 100 mM NaCl, 200 mM ArgHCl, 10% glycerol, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2014 Dec 19

Self-Assembling Supramolecular Nanostructures Constructed from de Novo Extender Protein Nanobuilding Blocks. ACS Synth Biol 7(5):1381-1394 (2018)
...Arai R

R_g^Guinier	3.3	nm
D_max	12.0	nm

SASDKM8 – Rationally optimised WA20 (ROWA) dimer

Rationally optimised WA20 mutant N22A/H86K (ROWA) dimer experimental SAS data

Sample:	Rationally optimised WA20 mutant N22A/H86K (ROWA) dimer dimer, 25 kDa Artificial protein (de … protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Nov 30

Rational thermostabilisation of four-helix bundle dimeric de novo proteins. Sci Rep 11(1):7526 (2021)
...Arai R

R_g^Guinier	2.5	nm
D_max	9.9	nm
Volume^Porod	30	nm³

SASDKN8 – Rationally optimised WA20 (ROWA) tetramer

Rationally optimised WA20 mutant N22A/H86K (ROWA) tetramer experimental SAS data

Sample:	Rationally optimised WA20 mutant N22A/H86K (ROWA) tetramer tetramer, 50 kDa Artificial protein (de … protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Nov 30

Rational thermostabilisation of four-helix bundle dimeric de novo proteins. Sci Rep 11(1):7526 (2021)
...Arai R

R_g^Guinier	4.1	nm
D_max	18.1	nm
Volume^Porod	60	nm³

SASDKP8 – Rationally optimised WA20 (ROWA) hexamer

Rationally optimised WA20 mutant N22A/H86K (ROWA) hexamer experimental SAS data

Sample:	Rationally optimised WA20 mutant N22A/H86K (ROWA) hexamer hexamer, 75 kDa Artificial protein (de … protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Nov 30

Rational thermostabilisation of four-helix bundle dimeric de novo proteins. Sci Rep 11(1):7526 (2021)
...Arai R

R_g^Guinier	5.3	nm
D_max	24.8	nm
Volume^Porod	120	nm³

SASDKQ8 – Rationally optimised SUWA (ROSA) dimer

Rationally optimised SUWA mutant N22E/H86K (ROSA) dimer experimental SAS data

Sample:	Rationally optimised SUWA mutant N22E/H86K (ROSA) dimer dimer, 25 kDa Artificial protein (de … protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Nov 30

Rational thermostabilisation of four-helix bundle dimeric de novo proteins. Sci Rep 11(1):7526 (2021)
...Arai R

R_g^Guinier	2.5	nm
D_max	10.6	nm
Volume^Porod	30	nm³

SASDKR8 – Rationally optimised SUWA (ROSA) tetramer

Rationally optimised SUWA mutant N22E/H86K (ROSA) tetramer experimental SAS data

Sample:	Rationally optimised SUWA mutant N22E/H86K (ROSA) tetramer tetramer, 50 kDa Artificial protein (de … protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Nov 30

Rational thermostabilisation of four-helix bundle dimeric de novo proteins. Sci Rep 11(1):7526 (2021)
...Arai R

R_g^Guinier	4.4	nm
D_max	22.1	nm
Volume^Porod	88	nm³

SASDDZ8 – Designed hollow protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)

Fusion protein of LSm and MyoX-coil experimental SAS data

Sample:	Fusion protein of LSm and MyoX-coil , 1066 kDa Artificial protein protein
Buffer:	25 mM HEPES, 100 mM NaCl, 1 mM EDTA, 5% glycerol, pH: 8
Experiment:	SAXS data collected at BL-6A, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2017 Nov 11

Design of Hollow Protein Nanoparticles with Modifiable Interior and Exterior Surfaces. Angew Chem Int Ed Engl (2018)
...Arai R, Miyamoto K

R_g^Guinier	9.4	nm
D_max	23.0	nm

SASDLD8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.270)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.2

SASDLE8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.280)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.2

SASDLF8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.290)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.1

SASDLG8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.300)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.0

SASDLH8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.310)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier

1.9

SASDLJ8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.320)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.0

SASDLK8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.330)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.0

SASDL58 – The Fe–S cluster assembly 1 homolog of pigeon before applying the external magnetic field (0 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	4.7	nm
D_max	15.8	nm

SASDL68 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 5 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.0	nm
D_max	16.2	nm

SASDL78 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 10 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	4.9	nm
D_max	16.5	nm

SASDL88 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 30 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.1	nm
D_max	17.2	nm

SASDL98 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 60 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.5	nm
D_max	19.1	nm

SASDLA8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 5 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.7	nm
D_max	18.9	nm

SASDLL8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 10 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.7	nm
D_max	18.9	nm

SASDLB8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 30 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.4	nm
D_max	19.0	nm

SASDLC8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 60 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.7	nm
D_max	21.2	nm

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