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14 hits found for Cytochrome c'

SASDN52 – ...cytochrome c' from Alcaligenes xylosoxidans at pD = 1.7

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' monomer, 14 kDa Achromobacter xylosoxidans protein
Buffer: Phosphate Buffer pD 1.7, pH: 1.7
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
...Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 2.3 nm
Dmax 8.6 nm
VolumePorod 13 nm3

SASDN62 – ...cytochrome c' from Alcaligenes xylosoxidans at pD = 6.4

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' dimer, 27 kDa Alcaligenes protein
Buffer: Phosphate Buffer pD 6.4, pH: 6.4
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
...Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 1.8 nm
Dmax 5.5 nm
VolumePorod 11 nm3

SASDN72 – ...cytochrome c' from Alcaligenes xylosoxidans at pD = 9.6

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' dimer, 27 kDa Alcaligenes protein
Buffer: Phosphate Buffer pD 9.6, pH: 9.6
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
...Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 1.9 nm
Dmax 5.3 nm
VolumePorod 10 nm3

SASDN82 – ...cytochrome c' from Alcaligenes xylosoxidans at pD = 13

Cytochrome c' experimental SAS data
Cytochrome c' Kratky plot
Sample: Cytochrome c' monomer, 14 kDa Achromobacter xylosoxidans protein
Buffer: Phosphate Buffer pD 13, pH: 13
Experiment: SANS data collected at KWS1, FRM2 on 2017 Aug 12
...Cytochrome c′ Revealed by Small Angle Neutron Scattering Biomolecules 12(1):95 (2022)
Yamaguchi T, Akao K, Koutsioubas A, Frielinghaus H, Kohzuma T
RgGuinier 4.8 nm
Dmax 9.0 nm
VolumePorod 20 nm3

SASDAB2Cytochrome c from equine heart

Cytochrome cHeme C experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Cytochrome c monomer, 12 kDa Equus caballus protein
Heme C monomer, 1 kDa
Buffer: 25 mM HEPES, 100 mM NaCl, 3% v/v glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Apr 8
Standard proteins
Cy M Jeffries
RgGuinier 1.3 nm
Dmax 3.7 nm
VolumePorod 12 nm3

SASDAN5 – Cross-linked complex CytC_Adr

Cytochrome CAdrenodoxin experimental SAS data
DAMMIN model
Sample: Cytochrome C monomer, 11 kDa Escherichia coli protein
Adrenodoxin monomer, 11 kDa Escherichia coli protein
Buffer: 20 mM HEPES 2 mM DTT, pH: 7.4
Experiment: SAXS data collected at EMBL X33, DORIS III on 2006 Jun 15
Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy. J Am Chem Soc 130(20):6395-403 (2008)
Xu X, Reinle W, Hannemann F, Konarev PV, Svergun DI, Bernhardt R, Ubbink M
RgGuinier 2.1 nm
Dmax 8.5 nm
VolumePorod 42 nm3

SASDAP5 – Native complex CytC_Adr

Cytochrome C dimerAdrenodoxin dimer experimental SAS data
DAMMIN model
Sample: Cytochrome C dimer dimer, 22 kDa Escherichia coli protein
Adrenodoxin dimer dimer, 22 kDa Escherichia coli protein
Buffer: 20 mM HEPES 2 mM DTT, pH: 7.4
Experiment: SAXS data collected at EMBL X33, DORIS III on 2006 Jun 15
Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy. J Am Chem Soc 130(20):6395-403 (2008)
Xu X, Reinle W, Hannemann F, Konarev PV, Svergun DI, Bernhardt R, Ubbink M
RgGuinier 2.9 nm
Dmax 9.5 nm
VolumePorod 64 nm3

SASDLW5Cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens

Cytochrome c-552 experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Cytochrome c-552 hexamer, 356 kDa Thioalkalivibrio nitratireducens (strain … protein
Buffer: Tris-borate buffer, pH: 8.5
Experiment: SAXS data collected at EMBL X33, DORIS III on 2005 May 8
...cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens. Biochemistry (Mosc) 73(2):164-70 (2008)
Tikhonova TV, Slutskaya ES, Filimonenkov AA, Boyko KM, Kleimenov SY, Konarev PV, Polyakov KM, Svergun DI, Trofimov AA, Khomenkov VG, Zvyagilskaya RA, Popov VO
RgGuinier 4.8 nm

SASDN77 – Truncated histone shaperone protein SET/TAF-Ib DC

SET nuclear proto-oncogene experimental SAS data
AMBER model
Sample: SET nuclear proto-oncogene dimer, 53 kDa Homo sapiens protein
Buffer: Sodium phosphate buffer, pH: 6.3
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Nov 11
...cytochrome c upon formation of a diffuse encounter complex with SET/TAF-Iβ Computational and Structural Biotechnology Journal (2022)
Casado-Combreras M, Rivero-Rodríguez F, Elena-Real C, Molodenskiy D, Díaz-Quintana A, Martinho M, Gerbaud G, González-Arzola K, Velázquez-Campoy A, Svergun D, Belle V, De la Rosa M, Díaz-Moreno I
RgGuinier 3.1 nm
Dmax 9.7 nm
VolumePorod 87 nm3

SASDN87 – ...cytochrome c

Cytochrome cSET nuclear proto-oncogene experimental SAS data
SASREF model
Sample: Cytochrome c dimer, 24 kDa Homo sapiens protein
SET nuclear proto-oncogene dimer, 53 kDa Homo sapiens protein
Buffer: Sodium phosphate buffer, pH: 6.3
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Nov 11
...cytochrome c upon formation of a diffuse encounter complex with SET/TAF-Iβ Computational and Structural Biotechnology Journal (2022)
Casado-Combreras M, Rivero-Rodríguez F, Elena-Real C, Molodenskiy D, Díaz-Quintana A, Martinho M, Gerbaud G, González-Arzola K, Velázquez-Campoy A, Svergun D, Belle V, De la Rosa M, Díaz-Moreno I
RgGuinier 4.2 nm
Dmax 16.0 nm

SASDL97 – Ru-MtrCAB complex formed by reconstitution of Ru-MtrC and MtrAB

Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrAExtracellular iron oxide respiratory system surface decaheme cytochrome c component MtrCExtracellular iron oxide respiratory system outer membrane component MtrB experimental SAS data
DAMMIN model
Sample: ...cytochrome c component MtrA monomer, 39 kDa Shewanella oneidensis (strain … protein
...cytochrome c component MtrC monomer, 77 kDa Shewanella oneidensis (strain … protein
Extracellular iron oxide respiratory system outer membrane component MtrB monomer, 75 kDa Shewanella oneidensis (strain … protein
Buffer: 20 mM HEPES, 100 mM NaCl, 2.8 mM Fos-choline 12, 13% D2O, pH: 7.8
Experiment: SANS data collected at D22, Institut Laue-Langevin (ILL) on 2020 Jan 13
Bespoke Biomolecular Wires for Transmembrane Electron Transfer: Spontaneous Assembly of a Functionalized Multiheme Electron Conduit Frontiers in Microbiology 12 (2021)
Piper S, Edwards M, van Wonderen J, Casadevall C, Martel A, Jeuken L, Reisner E, Clarke T, Butt J
RgGuinier 4.7 nm
Dmax 16.6 nm
VolumePorod 154 nm3

SASDLA7 – Outer membrane protein complex MtrCAB

Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrAExtracellular iron oxide respiratory system outer membrane component MtrBExtracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC experimental SAS data
DAMMIN model
Sample: ...cytochrome c component MtrA monomer, 39 kDa Shewanella oneidensis (strain … protein
Extracellular iron oxide respiratory system outer membrane component MtrB monomer, 75 kDa Shewanella oneidensis (strain … protein
...cytochrome c component MtrC monomer, 75 kDa Shewanella oneidensis (strain … protein
Buffer: 20 mM HEPES, 100 mM NaCl, 2.8 mM Fos-choline 12, 13% D2O, pH: 7.8
Experiment: SANS data collected at D22, Institut Laue-Langevin (ILL) on 2016 Sep 12
Bespoke Biomolecular Wires for Transmembrane Electron Transfer: Spontaneous Assembly of a Functionalized Multiheme Electron Conduit Frontiers in Microbiology 12 (2021)
Piper S, Edwards M, van Wonderen J, Casadevall C, Martel A, Jeuken L, Reisner E, Clarke T, Butt J
RgGuinier 5.2 nm
Dmax 17.1 nm
VolumePorod 234 nm3

SASDCH8 – ...cytochrome C (WAXS)

Cytochrome c experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Cytochrome c monomer, 12 kDa Equus caballus protein
Buffer: tbs, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Jul 16
WAXS benchmark on standard proteins
Maxim Petoukhov
RgGuinier 1.2 nm

SASDCS8Cytochrome C

Cytochrome C experimental SAS data
Cytochrome C Kratky plot
Sample: Cytochrome C monomer, 12 kDa Bos taurus protein
Buffer: TRIS 50mM, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Dec 21
A high flux setup for millisecond-scale small-angle X-ray scattering studies on macromolecular solutions
Clement Blanchet
RgGuinier 1.3 nm