SASBDB entries for UniProt ID:

SASDKF5 – the Gemin2/delta linker Survival Motor Neuron-like protein 1 (SMN1, Δ36-119, S130D) complex from Schizosaccharomyces pombe

UniProt ID: P0CU08 (81-235) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)

UniProt ID: Q09808 (None-None) Survival motor neuron-like protein 1 (Δ36-119)
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)Survival motor neuron-like protein 1 (Δ36-119) experimental SAS data
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) Kratky plot
Sample: Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Survival motor neuron-like protein 1 (Δ36-119) monomer, 8 kDa Schizosaccharomyces pombe protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 30
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 2.7 nm
Dmax 9.0 nm

SASDK46 – Coronin from Trypanosoma brucei brucei (C-terminal coiled coil domain)

UniProt ID: Q57W63 (476-523) Coronin
Coronin experimental SAS data
GASBOR model
Sample: Coronin tetramer, 21 kDa Trypanosoma brucei brucei … protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR - Institute of Microbial Technology (IMTech) on 2019 Oct 17
Structural insights into kinetoplastid coronin oligomerization domain and F-actin interaction Current Research in Structural Biology (2021)
Parihar P, Singh A, Karade S, Sahasrabuddhe A, Pratap J
RgGuinier 3.3 nm
Dmax 12.5 nm
VolumePorod 22 nm3

SASDK56 – Cell cycle associated protein MOB1, putative, from Leishmania donovani

UniProt ID: E9B8V9 (1-223) Cell cycle associated protein MOB1, putative
Cell cycle associated protein MOB1, putative experimental SAS data
GASBOR model
Sample: Cell cycle associated protein MOB1, putative monomer, 27 kDa Leishmania donovani (strain … protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2017 Jun 22
Structural insights into kinetoplastid coronin oligomerization domain and F-actin interaction Current Research in Structural Biology (2021)
Parihar P, Singh A, Karade S, Sahasrabuddhe A, Pratap J
RgGuinier 2.1 nm
Dmax 5.6 nm
VolumePorod 59 nm3

SASDK66 – the Gemin2/delta linker Survival Motor Neuron-like protein 1 (SMN1, Δ36-119) complex from Schizosaccharomyces pombe

UniProt ID: P0CU08 (81-235) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)

UniProt ID: Q09808 (None-None) Survival motor neuron-like protein 1 (Δ36-119)
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)Survival motor neuron-like protein 1 (Δ36-119) experimental SAS data
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) Kratky plot
Sample: Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Survival motor neuron-like protein 1 (Δ36-119) monomer, 8 kDa Schizosaccharomyces pombe protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 29
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 4.8 nm
Dmax 16.0 nm
VolumePorod 386 nm3

SASDK76 – Polymerase delta-interacting protein 2 (POLDIP2, amino acids 51-368)

UniProt ID: Q9Y2S7 (51-368) Polymerase delta-interacting protein 2
Polymerase delta-interacting protein 2 experimental SAS data
Polymerase delta-interacting protein 2 Kratky plot
Sample: Polymerase delta-interacting protein 2 monomer, 37 kDa Homo sapiens protein
Buffer: 20 mM HEPES pH 7.5, 500 mM NaCl, 5% (v/v) glycerol, pH: 7.5
Experiment: SAXS data collected at Bruker Nanostar, University of Huddersfield on 2019 Jul 18
Crystal structure and molecular dynamics of human POLDIP2, a multifaceted adaptor protein in metabolism and genome stability. Protein Sci (2021)
Kulik AA, Maruszczak KK, Thomas DC, Nabi-Aldridge NLA, Carr M, Bingham RJ, Cooper CDO
RgGuinier 2.2 nm
Dmax 7.2 nm
VolumePorod 56 nm3

SASDK86 – wild-type TRIM72 (Tripartite motif-containing protein 72)

UniProt ID: Q1XH17 (2-477) Tripartite motif-containing protein 72
Tripartite motif-containing protein 72 experimental SAS data
DAMMIN model
Sample: Tripartite motif-containing protein 72 dimer, 105 kDa Mus musculus protein
Buffer: 25 mM Tris-HCl, pH 8.0, 300 mM NaCl, 1 mM TCEP, 1 mM DTT, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 7
Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane. Nat Struct Mol Biol (2023)
Park SH, Han J, Jeong BC, Song JH, Jang SH, Jeong H, Kim BH, Ko YG, Park ZY, Lee KE, Hyun J, Song HK
RgGuinier 6.9 nm
Dmax 24.0 nm
VolumePorod 384 nm3

SASDK96 – tripartite motif-containing protein 72 (TRIM72) lacking the zinc finger RING domain (ΔRING)

UniProt ID: Q1XH17 (79-470) Tripartite motif-containing protein 72
Tripartite motif-containing protein 72 experimental SAS data
OTHER model
Sample: Tripartite motif-containing protein 72 dimer, 88 kDa Mus musculus protein
Buffer: 25 mM Tris-HCl, pH 8.0, 300 mM NaCl, 1 mM TCEP, 1 mM DTT, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 7
Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane. Nat Struct Mol Biol (2023)
Park SH, Han J, Jeong BC, Song JH, Jang SH, Jeong H, Kim BH, Ko YG, Park ZY, Lee KE, Hyun J, Song HK
RgGuinier 5.1 nm
Dmax 18.7 nm
VolumePorod 142 nm3

SASDKA6 – Flavonoid-responsive regulator A (FrrA)

UniProt ID: A0A2A6N3G4 (19-229) TetR/AcrR family transcriptional regulator
TetR/AcrR family transcriptional regulator experimental SAS data
CORAL model
Sample: TetR/AcrR family transcriptional regulator dimer, 48 kDa Bradyrhizobium diazoefficiens protein
Buffer: 20 mM Na2HPO4, 50 mM NaCl, 50 mM imidazole, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Sep 23
The Induction Mechanism of the Flavonoid-Responsive Regulator FrrA. FEBS J (2021)
Werner N, Werten S, Hoppen J, Palm GJ, Göttfert M, Hinrichs W
RgGuinier 3.4 nm
Dmax 9.0 nm
VolumePorod 93 nm3

SASDKB6 – Flavonoid-responsive regulator A (FrrA) in the presence of genistein

UniProt ID: A0A2A6N3G4 (19-229) TetR/AcrR family transcriptional regulator

UniProt ID: None (None-None) 5,7-dihydroxy-3-(4-hydroxyphenyl)chromen-4-one
TetR/AcrR family transcriptional regulator5,7-dihydroxy-3-(4-hydroxyphenyl)chromen-4-one experimental SAS data
TetR/AcrR family transcriptional regulator 5,7-dihydroxy-3-(4-hydroxyphenyl)chromen-4-one Kratky plot
Sample: TetR/AcrR family transcriptional regulator dimer, 48 kDa Bradyrhizobium diazoefficiens protein
5,7-dihydroxy-3-(4-hydroxyphenyl)chromen-4-one monomer, 0 kDa
Buffer: 20 mM Na2HPO4, 50 mM NaCl, 50 mM imidazole, 0.08 mM genistein, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2015 Oct 27
The Induction Mechanism of the Flavonoid-Responsive Regulator FrrA. FEBS J (2021)
Werner N, Werten S, Hoppen J, Palm GJ, Göttfert M, Hinrichs W
RgGuinier 3.4 nm
Dmax 8.7 nm
VolumePorod 96 nm3

SASDKC6 – Flavonoid-responsive regulator A (FrrA) in the presence of naringenin

UniProt ID: A0A2A6N3G4 (19-229) TetR/AcrR family transcriptional regulator

UniProt ID: None (None-None) 5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one
TetR/AcrR family transcriptional regulator5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one experimental SAS data
TetR/AcrR family transcriptional regulator 5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one Kratky plot
Sample: TetR/AcrR family transcriptional regulator dimer, 48 kDa Bradyrhizobium diazoefficiens protein
5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one monomer, 0 kDa
Buffer: 20 mM Na2HPO4, 50 mM NaCl, 50 mM imidazole, 1 mM naringenin, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Sep 23
The Induction Mechanism of the Flavonoid-Responsive Regulator FrrA. FEBS J (2021)
Werner N, Werten S, Hoppen J, Palm GJ, Göttfert M, Hinrichs W
RgGuinier 3.2 nm
Dmax 8.6 nm
VolumePorod 91 nm3