Browse by MODEL: Ab initio only

SASDN78 – Pikachurin N-terminal FnIII(1-2) fragment (SEC-SAXS)

Pikachurin N-terminal FnIII(1-2) domains experimental SAS data
GASBOR model
Sample: Pikachurin N-terminal FnIII(1-2) domains monomer, 25 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Mar 3
Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179 Science Signaling 16(795) (2023)
Patil D, Pantalone S, Cao Y, Laboute T, Novick S, Singh S, Savino S, Faravelli S, Magnani F, Griffin P, Singh A, Forneris F, Martemyanov K
RgGuinier 3.4 nm
Dmax 16.4 nm
VolumePorod 44 nm3

SASDN88 – Pikachurin C-terminal EGF-LG3 fragment (SEC-SAXS)

Pikachurin experimental SAS data
GASBOR model
Sample: Pikachurin monomer, 26 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Mar 3
Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179 Science Signaling 16(795) (2023)
Patil D, Pantalone S, Cao Y, Laboute T, Novick S, Singh S, Savino S, Faravelli S, Magnani F, Griffin P, Singh A, Forneris F, Martemyanov K
RgGuinier 2.3 nm
Dmax 7.4 nm
VolumePorod 52 nm3

SASDJ26 – Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial-monomer

Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial experimental SAS data
DAMMIN model
Sample: Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial monomer, 70 kDa Saccharomyces cerevisiae protein
Buffer: 40 mM Tris pH 7.5, 500 mM NaCl, 5% glycerol, 2.5 mM DTT, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2017 May 1
Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22
Jahangir Alam
RgGuinier 3.8 nm
Dmax 13.9 nm
VolumePorod 160 nm3

SASDJ36 – Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial-dimer

dimeric Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial experimental SAS data
DAMMIN model
Sample: Dimeric Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial dimer, 141 kDa Saccharomyces cerevisiae protein
Buffer: 40 mM Tris pH 7.5, 500 mM NaCl, 5% glycerol, 2.5 mM DTT, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2017 May 1
Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22
Jahangir Alam
RgGuinier 5.0 nm
Dmax 18.2 nm
VolumePorod 516 nm3

SASDFY9 – Sperm-associated antigen 1 (SPAG1)

Sperm-associated antigen 1 experimental SAS data
DAMMIF model
Sample: Sperm-associated antigen 1 monomer, 104 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2019 Mar 21
R2SP
Raphael Dos Santos Morais
RgGuinier 7.3 nm
Dmax 34.0 nm
VolumePorod 374 nm3

SASDFZ9 – RuvB-like 1 and 2, sperm-associated antigen 1 complex (His-RuvBL1/RuvBL2/SPAG1)

RuvB-like 1RuvB-like 2Sperm-associated antigen 1 experimental SAS data
DAMMIF model
Sample: RuvB-like 1 hexamer, 311 kDa Homo sapiens protein
RuvB-like 2 hexamer, 311 kDa Homo sapiens protein
Sperm-associated antigen 1 monomer, 104 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2019 Mar 21
R2SP
Raphael Dos Santos Morais
RgGuinier 6.8 nm
Dmax 34.8 nm
VolumePorod 1800 nm3

SASDG22 – RuvB-like 1 and 2 dodecamer (His-RuvBL1/RuvBL2)

RuvB-like 1RuvB-like 2 experimental SAS data
DAMMIF model
Sample: RuvB-like 1 hexamer, 311 kDa Homo sapiens protein
RuvB-like 2 hexamer, 311 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2019 Mar 3
R2SP
Raphael Dos Santos Morais
RgGuinier 6.3 nm
Dmax 23.4 nm
VolumePorod 1550 nm3

SASDG32 – Sperm-associated antigen 1, PIH1 domain-containing protein 2 heterodimer complex (SPAG1/PIH1D2)

Sperm-associated antigen 1PIH1 domain-containing protein 2 experimental SAS data
DAMMIF model
Sample: Sperm-associated antigen 1 monomer, 104 kDa Homo sapiens protein
PIH1 domain-containing protein 2 monomer, 36 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2019 Mar 21
R2SP
Raphael Dos Santos Morais
RgGuinier 7.0 nm
Dmax 30.9 nm
VolumePorod 664 nm3

SASDG42 – Truncated sperm-associated antigen 1 (622-926), PIH1 domain-containing protein 2 heterodimer complex (SPAG1(622-926)/PIH1D2)

PIH1 domain-containing protein 2Sperm-associated antigen 1 experimental SAS data
DAMMIF model
Sample: PIH1 domain-containing protein 2 monomer, 36 kDa Homo sapiens protein
Sperm-associated antigen 1 monomer, 35 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2019 Mar 21
R2SP
Raphael Dos Santos Morais
RgGuinier 5.0 nm
Dmax 19.3 nm
VolumePorod 123 nm3

SASDRT5 – Azotobacter vinelandii nitrogen fixation regulatory protein (NifL) under oxidizing conditions in the presence of ADP

Nitrogen fixation regulatory protein (Q409L) experimental SAS data
Sample: Nitrogen fixation regulatory protein (Q409L) dimer, 115 kDa Azotobacter vinelandii protein
Buffer: 50 mM Bis-Tris, 100 mM (NH4)2SO4, 10% glycerol, 5 mM DTT, pH: 7
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2022 Jul 5
Structural insights into redox signal transduction mechanisms in the control of nitrogen fixation by the NifLA system Proceedings of the National Academy of Sciences 120(30) (2023)
Boyer N, Tokmina-Lukaszewska M, Bueno Batista M, Mus F, Dixon R, Bothner B, Peters J
RgGuinier 4.9 nm
Dmax 17.9 nm
VolumePorod 233 nm3