Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDRP9 – Polydisperse core-shell ellipsoidal micelles of Polysorbate 20 (PS20) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml)

Polydisperse core-shell ellipsoidal micelles of Polysorbate 20 (PS20) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml) experimental SAS data

Sample:	Polydisperse core-shell ellipsoidal micelles of Polysorbate 20 (PS20) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml) 0, 45 kDa
Buffer:	aqueous solution of 4% methanol, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Nov 2

Small-angle x-ray scattering investigation of the integration of free fatty acids in polysorbate 20 micelles Biophysical Journal (2023)
Ehrit J, Gräwert T, Göddeke H, Konarev P, Svergun D, Nagel N

R_g^Guinier	3.5	nm
D_max	8.8	nm

SASDRQ9 – Polydisperse core-shell ellipsoidal micelles of POE sorbitan monolaurate fraction (F2) with no or low amount of the fatty acid myristic acid (MA) (< 100 µg/ml)

$Polydisperse core-shell ellipsoidal micelles of POE sorbitan monolaurate fraction (F2) with no or low amount of the fatty acid myristic acid (MA) (< 100 µg/ml) experimental SAS data$

Sample:	Polydisperse core-shell ellipsoidal micelles of POE sorbitan monolaurate fraction (F2) with no or low amount of the fatty acid myristic acid (MA) (< 100 µg/ml) 20-mer, 24 kDa
Buffer:	aqueous solution of 4% methanol, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Mar 6

R_g^Guinier	3.0	nm
D_max	8.0	nm

SASDRR9 – Polydisperse core-shell ellipsoidal micelles of POE sorbitan monolaurate fraction (F2) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml)

$Polydisperse core-shell ellipsoidal micelles of POE sorbitan monolaurate fraction (F2) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml) experimental SAS data$

Sample:	Polydisperse core-shell ellipsoidal micelles of POE sorbitan monolaurate fraction (F2) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml) 22-mer, 26 kDa
Buffer:	aqueous solution of 4% methanol, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Mar 6

R_g^Guinier	3.1	nm
D_max	8.3	nm

SASDRS9 – Polydisperse core-shell ellipsoidal micelles of POE sorbitan higher order esters fraction (F4) with no or low amount of the fatty acid myristic acid (MA) (< 100 µg/ml)

$Polydisperse core-shell ellipsoidal micelles of POE sorbitan higher order esters fraction (F4) with no or low amount of the fatty acid myristic acid (MA) (< 100 µg/ml) experimental SAS data$

Sample:	Polydisperse core-shell ellipsoidal micelles of POE sorbitan higher order esters fraction (F4) with no or low amount of the fatty acid myristic acid (MA) (< 100 µg/ml) 0, 42 kDa
Buffer:	aqueous solution of 4% methanol, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Oct 29

R_g^Guinier	3.3	nm
D_max	8.3	nm

SASDRT9 – Polydisperse core-shell ellipsoidal micelles of POE sorbitan higher order esters fraction (F4) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml)

$Polydisperse core-shell ellipsoidal micelles of POE sorbitan higher order esters fraction (F4) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml) experimental SAS data$

Sample:	Polydisperse core-shell ellipsoidal micelles of POE sorbitan higher order esters fraction (F4) with high amount of the fatty acid myristic acid (MA) (> 500 µg/ml) 0, 42 kDa
Buffer:	aqueous solution of 4% methanol, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Oct 29

R_g^Guinier	3.5	nm
D_max	8.7	nm

SASDRR5 – Like Early Starvation 1

Sample:	At3g55760 monomer, 60 kDa Arabidopsis thaliana protein
Buffer:	50 mM Tris, 150 mM NaCl, 10% glycerol, 2 mM DTT, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2016 Dec 8

LIKE EARLY STARVATION 1 and EARLY STARVATION 1 promote and stabilize amylopectin phase transition in starch biosynthesis. Sci Adv 9(21):eadg7448 (2023)
Liu C, Pfister B, Osman R, Ritter M, Heutinck A, Sharma M, Eicke S, Fischer-Stettler M, Seung D, Bompard C, Abt MR, Zeeman SC

R_g^Guinier	3.7	nm
D_max	16.0	nm
Volume^Porod	121	nm³

SASDPZ5 – Gcf1p protein bound to DNA at 1.0 mg/mL

Sample:	Gcf1p monomer, 26 kDa Candida albicans (strain … protein Af2_20 DNA monomer, 12 kDa DNA
Buffer:	25 mM Tris, 20 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Aug 30

Structural analysis of the Candida albicans mitochondrial DNA maintenance factor Gcf1p reveals a dynamic DNA-bridging mechanism. Nucleic Acids Res (2023)
Tarrés-Solé A, Battistini F, Gerhold JM, Piétrement O, Martínez-García B, Ruiz-López E, Lyonnais S, Bernadó P, Roca J, Orozco M, Le Cam E, Sedman J, Solà M

R_g^Guinier	3.6	nm
D_max	16.0	nm
Volume^Porod	92	nm³

SASDP26 – Gcf1p protein bound to DNA at 2.0 mg/mL

Sample:	Gcf1p monomer, 26 kDa Candida albicans (strain … protein Af2_20 DNA monomer, 12 kDa DNA
Buffer:	25 mM Tris, 20 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Aug 30

R_g^Guinier	3.9	nm
D_max	16.0	nm
Volume^Porod	133	nm³

SASDP36 – N-terminal truncated Gcf1p (amino acids 59-245) bound to DNA

Af2_20 DNAGcf1p(Δ58) experimental SAS data

Sample:	Af2_20 DNA monomer, 12 kDa DNA Gcf1p(Δ58) monomer, 22 kDa Candida albicans (strain … protein
Buffer:	25 mM Tris, 20 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2019 Aug 30

R_g^Guinier	2.6	nm
D_max	10.5	nm
Volume^Porod	52	nm³

SASDQJ6 – Monkeypox viral synthetic DNA fragment (DNA sequence 1, MP1)

Monekypox DNA sequence 1 experimental SAS data

Sample:	Monekypox DNA sequence 1 monomer, 6 kDa Monkeypox virus DNA
Buffer:	20 mM HEPES, 100 mM KCl, and 0.2 mM EDTA, pH: 7.4
Experiment:	SAXS data collected at B21, Diamond Light Source on 2022 Sep 23

Mapping and characterization of G‐quadruplexes in monkeypox genomes Journal of Medical Virology 95(5) (2023)
Pereira H, Gemmill D, Siddiqui M, Vasudeva G, Patel T

R_g^Guinier	1.7	nm
D_max	4.4	nm
Volume^Porod	14	nm³

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