Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDQD9 – N-terminal domain of YdaT_toxin domain-containing protein

YdaT_toxin domain-containing protein experimental SAS data

Sample:	YdaT_toxin domain-containing protein monomer, 13 kDa Escherichia coli O157:H7 protein
Buffer:	20 mM Tris-HCl, 200 mM NaCl, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2022 Apr 16

Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7 Acta Crystallographica Section D Structural Biology 79(3):245-258 (2023)
Prolič-Kalinšek M, Volkov A, Hadži S, Van Dyck J, Bervoets I, Charlier D, Loris R

R_g^Guinier	1.7	nm
D_max	5.7	nm
Volume^Porod	29	nm³

SASDPX7 – DNA protection during starvation protein (Dps) loaded with FeSO4⋅7H2O in the amount corresponding to 50 iron atoms per dodecamer. Anomalous SAXS spanning the X-ray Fe-absorption edge 7.100-7.133 keV.

DNA protection during starvation protein experimental SAS data

Sample:	DNA protection during starvation protein dodecamer, 224 kDa Escherichia coli (strain … protein
Buffer:	50 mM NaCl, 0.5 mM EDTA, 50 mM Tris-HCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Oct 5

An Anomalous Small-Angle X-Ray Scattering Study of the Formation of Iron Clusters in the Inner Cavity of the Ferritin-Like Protein Dps Moscow University Physics Bulletin 77(6):858-867 (2023)
Gordienko A, Mozhaev A, Gibizova V, Dadinova L

R_g^Guinier	3.8	nm
D_max	14.0	nm
Volume^Porod	32	nm³

SASDPY7 – DNA protection during starvation protein (Dps) loaded with FeSO4⋅7H2O in the amount corresponding to 500 iron atoms per dodecamer. Anomalous SAXS spanning the X-ray Fe-absorption edge 7.100-7.133 keV.

Sample:	DNA protection during starvation protein dodecamer, 224 kDa Escherichia coli (strain … protein
Buffer:	50 mM NaCl, 0.5 mM EDTA, 50 mM Tris-HCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Oct 5

R_g^Guinier	7.4	nm
D_max	12.0	nm

SASDPZ7 – DNA protection during starvation protein (Dps) loaded with FeSO4⋅7H2O in the amount corresponding to 2000 iron atoms per dodecamer. Anomalous SAXS spanning the X-ray Fe-absorption edge 7.100-7.133 keV.

Sample:	DNA protection during starvation protein dodecamer, 224 kDa Escherichia coli (strain … protein
Buffer:	50 mM NaCl, 0.5 mM EDTA, 50 mM Tris-HCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Oct 5

R_g^Guinier	7.1	nm
D_max	14.0	nm

SASDQG7 – Thermoanearobacter tengcongensis (Tte) fecB RNA riboswitch aptamer domain (rCbl)

Thermoanearobacter tengcongensis (Tte) fecB riboswitch aptamer domain experimental SAS data

Sample:	Thermoanearobacter tengcongensis (Tte) fecB riboswitch aptamer domain, 68 kDa marine metagenome RNA
Buffer:	50 mM MES pH 6.0, 10 mM KCl, 1 mM MgCl2, pH: 6
Experiment:	SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Apr 18

Visualizing RNA conformational and architectural heterogeneity in solution. Nat Commun 14(1):714 (2023)
Ding J, Lee YT, Bhandari Y, Schwieters CD, Fan L, Yu P, Tarosov SG, Stagno JR, Ma B, Nussinov R, Rein A, Zhang J, Wang YX

R_g^Guinier	5.9	nm
D_max	20.7	nm
Volume^Porod	206	nm³

SASDQH7 – Thermoanearobacter tengcongensis (Tte) fecB RNA riboswitch aptamer domain (rCbl) in the presence of coenzyme B12

Sample:	Thermoanearobacter tengcongensis (Tte) fecB riboswitch aptamer domain, 68 kDa marine metagenome RNA
Buffer:	50 mM MES pH 6.0, 10 mM KCl, 1 mM MgCl2, 4-18 μM coenzyme B12 ligand, pH: 6
Experiment:	SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Apr 18

R_g^Guinier	5.7	nm
D_max	19.7	nm
Volume^Porod	230	nm³

SASDQ88 – recombinant p123 expressed protein (Gli123)

p123 expressed protein experimental SAS data

Sample:	P123 expressed protein dimer, 248 kDa Mycoplasma mobile (strain … protein
Buffer:	100 mM ammonium acetate, pH: 6.8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Oct 25

Structure and Function of Gli123 Involved in Mycoplasma mobile Gliding. J Bacteriol :e0034022 (2023)
Matsuike D, Tahara YO, Nonaka T, Wu HN, Hamaguchi T, Kudo H, Hayashi Y, Arai M, Miyata M

R_g^Guinier	8.2	nm
D_max	31.6	nm
Volume^Porod	436	nm³

SASDQM4 – CRISPR associated Lon protease (CalpL)

SAVED domain-containing protein experimental SAS data

Sample:	SAVED domain-containing protein monomer, 58 kDa Sulfurihydrogenibium sp. (strain … protein
Buffer:	20 mM Tris, 50 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2021 Dec 14

Antiviral signalling by a cyclic nucleotide activated CRISPR protease. Nature 614(7946):168-174 (2023)
Rouillon C, Schneberger N, Chi H, Blumenstock K, Da Vela S, Ackermann K, Moecking J, Peter MF, Boenigk W, Seifert R, Bode BE, Schmid-Burgk JL, Svergun D, Geyer M, White MF, Hagelueken G

R_g^Guinier	3.1	nm
D_max	10.3	nm
Volume^Porod	80	nm³

SASDQP4 – CRISPR associated Lon protease (CalpL) in the presence of cyclic oligoadenylate cA4

Sample:	SAVED domain-containing protein monomer, 58 kDa Sulfurihydrogenibium sp. (strain … protein
Buffer:	20 mM Tris, 50 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Apr 8

R_g^Guinier	3.2	nm
D_max	10.3	nm
Volume^Porod	82	nm³

SASDQQ4 – CRISPR associated Lon protease (CalpL) asymmetrically dimerizing in the presence of cyclic oligoadenylate cA4

Sample:	SAVED domain-containing protein monomer, 58 kDa Sulfurihydrogenibium sp. (strain … protein
Buffer:	20 mM Tris, 50 mM NaCl, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2022 Apr 8

R_g^Guinier	3.8	nm
D_max	13.0	nm
Volume^Porod	116	nm³

First << Prev Page 21 of 89 Next >> Last