Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDLK8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.330)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial, 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
Arai S, Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.0

SASDND6 – Human ganglioside-induced differentiation-associated protein 1 (GDAP1) missense mutant H123R, construct GDAP1∆302-358

Ganglioside-induced differentiation-associated protein 1 (H123R) experimental SAS data

Sample:	Ganglioside-induced differentiation-associated protein 1 (H123R) dimer, 70 kDa Homo sapiens protein
Buffer:	25 mM HEPES, 300 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at SWING, SOLEIL on 2020 Oct 8

Structural insights into Charcot-Marie-Tooth disease-linked mutations in human GDAP1. FEBS Open Bio (2022)
Sutinen A, Nguyen GTT, Raasakka A, Muruganandam G, Loris R, Ylikallio E, Tyynismaa H, Bartesaghi L, Ruskamo S, Kursula P

R_g^Guinier	3.1	nm
D_max	9.9	nm
Volume^Porod	107	nm³

SASDNE6 – Human ganglioside-induced differentiation-associated protein 1 (GDAP1) missense mutant R120W, construct GDAP1∆302-358

Ganglioside-induced differentiation-associated protein 1 (R120W) experimental SAS data

Sample:	Ganglioside-induced differentiation-associated protein 1 (R120W) dimer, 70 kDa Homo sapiens protein
Buffer:	25 mM HEPES, 300 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at SWING, SOLEIL on 2020 Jul 1

R_g^Guinier	3.1	nm
D_max	10.0	nm
Volume^Porod	105	nm³

SASDNY7 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 50 mM NaCl pH 7.0

DNA protection during starvation, DPS (Ferritin superfamily) experimental SAS data

Sample:	DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 50 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

The Conformation of the N-Terminal Tails of Deinococcus grandis Dps Is Modulated by the Ionic Strength International Journal of Molecular Sciences 23(9):4871 (2022)
Guerra J, Blanchet C, Vieira B, Almeida A, Waerenborgh J, Jones N, Hoffmann S, Tavares P, Pereira A

R_g^Guinier	4.4	nm
D_max	16.1	nm
Volume^Porod	409	nm³

SASDNZ7 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 80 mM NaCl pH 7.0

Sample:	DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 80 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	4.5	nm
D_max	17.1	nm
Volume^Porod	475	nm³

SASDN28 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 230 mM NaCl pH 7.0

Sample:	DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 230 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	4.5	nm
D_max	20.6	nm
Volume^Porod	438	nm³

SASDN38 – DNA-binding protein from starved cells: DgrDpsWT in 50 mM MOPS, 480 mM NaCl pH 7.0

Sample:	DNA protection during starvation, DPS (Ferritin superfamily) dodecamer, 270 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 480 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	4.8	nm
D_max	20.5	nm
Volume^Porod	430	nm³

SASDN48 – DNA-binding protein from starved cells (tailless): DgrDps∆N in 50 mM MOPS, 50 mM NaCl pH 7.0

DNA protection during starvation, DPS-∆N (Ferritin superfamily) experimental SAS data

Sample:	DNA protection during starvation, DPS-∆N (Ferritin superfamily) dodecamer, 218 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 50 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	3.8	nm
D_max	9.3	nm
Volume^Porod	290	nm³

SASDN58 – DNA-binding protein from starved cells (tailless): DgrDps∆N in 50 mM MOPS, 230 mM NaCl pH 7.0

Sample:	DNA protection during starvation, DPS-∆N (Ferritin superfamily) dodecamer, 218 kDa Deinococcus grandis protein
Buffer:	50 mM MOPS-NaOH, 230 mM NaCl, pH: 7
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2020 Oct 22

R_g^Guinier	3.8	nm
D_max	8.8	nm
Volume^Porod	291	nm³

SASDML8 – Sulfite reductase hemoprotein

Sulfite reductase [NADPH] hemoprotein beta-component (Assimilatory NADPH-dependent sulfite reductase hemoprotein) experimental SAS data

Sample:	Sulfite reductase [NADPH] hemoprotein beta-component (Assimilatory NADPH-dependent sulfite reductase hemoprotein) monomer, 64 kDa Escherichia coli (strain … protein
Buffer:	50 mM KPi, 100 mM NaCl, 1 mM EDTA, pH: 7.8
Experiment:	SANS data collected at EQ-SANS (BL-6), Spallation Neutron Source on 2018 Jul 13

Neutron scattering maps the higher-order assembly of NADPH-dependent assimilatory sulfite reductase. Biophys J (2022)
Murray DT, Walia N, Weiss KL, Stanley CB, Randolph PS, Nagy G, Stroupe ME

R_g^Guinier	2.3	nm
D_max	7.2	nm
Volume^Porod	71	nm³

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