Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDNQ9 – Acyltransferase domain of polyketide synthase Pks13 at neutral pH

Polyketide synthase Pks13 experimental SAS data

Sample:	Polyketide synthase Pks13 monomer, 51 kDa Mycobacterium tuberculosis (strain … protein
Buffer:	50 mM Tris-HCl, 300 mM NaCl, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2011 Jun 3

Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. BMC Biol 20(1):147 (2022)
Bon C, Cabantous S, Julien S, Guillet V, Chalut C, Rima J, Brison Y, Malaga W, Sanchez-Dafun A, Gavalda S, Quémard A, Marcoux J, Waldo GS, Guilhot C, Mourey L

R_g^Guinier	2.8	nm
D_max	8.0	nm
Volume^Porod	85	nm³

SASDNR9 – Subfragment ACP1KSAT tridomain of polyketide synthase Pks13 at neutral pH

Sample:	Polyketide synthase Pks13 monomer, 116 kDa Mycobacterium tuberculosis (strain … protein
Buffer:	50 mM Tris-HCl 50 mM NaCl, pH: 8.5
Experiment:	SAXS data collected at EMBL X33, DORIS III, DESY on 2006 Nov 1

R_g^Guinier	3.8	nm
D_max	12.9	nm
Volume^Porod	186	nm³

SASDNS9 – KS domain of polyketide synthase Pks13 at neutral pH

Sample:	Polyketide synthase Pks13 monomer, 51 kDa Mycobacterium tuberculosis (strain … protein
Buffer:	50 mM Tris-HCl, 50 mM NaCl, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2012 Dec 7

R_g^Guinier	2.9	nm
D_max	10.0	nm
Volume^Porod	82	nm³

SASDNT9 – Subfragment KSAT of Polyketide synthase Pks13 at neutral pH

Sample:	Polyketide synthase Pks13 monomer, 104 kDa Mycobacterium tuberculosis (strain … protein
Buffer:	50 mM Tris-HCl, 50 mM NaCl, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2008 Sep 20

R_g^Guinier	3.8	nm
D_max	13.0	nm
Volume^Porod	155	nm³

SASDNU9 – Mycocerosic acid synthase in its apo form and at neutral pH

Mycocerosic acid synthase experimental SAS data

Sample:	Mycocerosic acid synthase monomer, 224 kDa Mycobacterium bovis (strain … protein
Buffer:	50 mM Tris-HCl, 50 mM NaCl, 10% glycerol, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2013 Oct 1

R_g^Guinier	5.7	nm
D_max	21.0	nm
Volume^Porod	420	nm³

SASDNV9 – Phenolpthiocerol synthase A of BCG at neutral pH

Phenolpthiocerol synthesis type-I polyketide synthase ppsA experimental SAS data

Sample:	Phenolpthiocerol synthesis type-I polyketide synthase ppsA monomer, 199 kDa Mycobacterium bovis (strain … protein
Buffer:	50 mM Tris-HCl, 500 mM NaCl, 2 mM EDTA, 10% glycerol, pH: 8
Experiment:	SAXS data collected at SWING, SOLEIL on 2012 Jun 14

R_g^Guinier	6.7	nm
D_max	20.2	nm
Volume^Porod	680	nm³

SASDN55 – A recoverin homology domain with EF hand domain of diacylglycerol kinase alpha under the condition with CaCl2

Diacylglycerol kinase alpha experimental SAS data

Sample:	Diacylglycerol kinase alpha monomer, 22 kDa Homo sapiens protein
Buffer:	20 mM TrisHCl, 200 mM NaCl, 5 mM DTT, 5% v/v glycerol, 3 mM CaCl2, pH: 7.4
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Dec 8

Ca ²⁺ ‐induced structural changes and intramolecular interactions in N‐terminal region of diacylglycerol kinase alpha Protein Science 31(7) (2022)
Takahashi D, Yonezawa K, Okizaki Y, Caaveiro J, Ueda T, Shimada A, Sakane F, Shimizu N

R_g^Guinier	1.9	nm
D_max	6.2	nm
Volume^Porod	44	nm³

SASDN65 – A recoverin homology domain with EF hand domain of diacylglycerol kinase alpha under the condition without CaCl2

Sample:	Diacylglycerol kinase alpha monomer, 22 kDa Homo sapiens protein
Buffer:	20mM TrisHCl, 200mM NaCl, 5mM DTT, 5% v/v Glycerol, 3mM EGTA, pH: 7.4
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Dec 8

R_g^Guinier	1.9	nm
D_max	7.0	nm
Volume^Porod	44	nm³

SASDNL2 – LincRNA-p21 Sense Alu Inverted Repeat

LincRNA-p21 AluSx1 Sense RNA experimental SAS data

Sample:	LincRNA-p21 AluSx1 Sense RNA monomer, 100 kDa Homo sapiens RNA
Buffer:	50mM HEPES,150 mM NaCl, 15 mM MgCl2, 3% glycerol, pH: 7.4
Experiment:	SAXS data collected at B21, Diamond Light Source on 2021 Jul 1

Biophysical characterisation of human LincRNA-p21 sense and antisense Alu inverted repeats. Nucleic Acids Res 50(10):5881-5898 (2022)
D'Souza MH, Mrozowich T, Badmalia MD, Geeraert M, Frederickson A, Henrickson A, Demeler B, Wolfinger MT, Patel TR

R_g^Guinier	6.1	nm
D_max	18.5	nm
Volume^Porod	225	nm³

SASDNM2 – LincRNA-p21 Antisense Alu Inverted Repeat

LincRNA-p21 AluSx1 Antisense RNA experimental SAS data

Sample:	LincRNA-p21 AluSx1 Antisense RNA monomer, 90 kDa Homo sapiens RNA
Buffer:	50mM HEPES,150 mM NaCl, 15 mM MgCl2, 3% glycerol, pH: 7.4
Experiment:	SAXS data collected at B21, Diamond Light Source on 2021 Jul 1

R_g^Guinier	5.9	nm
D_max	18.1	nm
Volume^Porod	375	nm³

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