Browse by MODEL: Ab initio only

SASDMV6 – The N2 domain of accessory colonization factor SslE

Accessory colonization factor experimental SAS data
DAMFILT model
Sample: Accessory colonization factor monomer, 23 kDa Escherichia coli (strain … protein
Buffer: 20 mM Tris, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2021 Apr 21
Molecular and cellular insight into Escherichia coli SslE and its role during biofilm maturation npj Biofilms and Microbiomes 8(1) (2022)
Corsini P, Wang S, Rehman S, Fenn K, Sagar A, Sirovica S, Cleaver L, Edwards-Gayle C, Mastroianni G, Dorgan B, Sewell L, Lynham S, Iuga D, Franks W, Jarvis J, Carpenter G, Curtis M, Bernadó P, Darbari V, Garnett J
RgGuinier 2.2 nm
Dmax 7.7 nm
VolumePorod 42 nm3

SASDMW6 – The N3-M60 domain of accessory colonization factor SslE

Accessory colonization factor experimental SAS data
DAMFILT model
Sample: Accessory colonization factor monomer, 121 kDa Escherichia coli (strain … protein
Buffer: 20 mM Tris, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2021 Apr 21
Molecular and cellular insight into Escherichia coli SslE and its role during biofilm maturation npj Biofilms and Microbiomes 8(1) (2022)
Corsini P, Wang S, Rehman S, Fenn K, Sagar A, Sirovica S, Cleaver L, Edwards-Gayle C, Mastroianni G, Dorgan B, Sewell L, Lynham S, Iuga D, Franks W, Jarvis J, Carpenter G, Curtis M, Bernadó P, Darbari V, Garnett J
RgGuinier 3.4 nm
Dmax 10.5 nm
VolumePorod 171 nm3

SASDPL8 – Molecular brush (PiPOx239-g-PnPrOx14) in a good solvent at concentration c=1.25 mg/mL

PiPOx239-g-PnPrOx14 experimental SAS data
DAMMIF model
Sample: PiPOx239-g-PnPrOx14 monomer, 413 kDa
Buffer: ethanol, pH: 7.3
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Jun 12
Rigid-to-Flexible Transition in a Molecular Brush in a Good Solvent at a Semidilute Concentration Langmuir 38(17):5226-5236 (2022)
Kang J, Sachse C, Ko C, Schroer M, Vela S, Molodenskiy D, Kohlbrecher J, Bushuev N, Gumerov R, Potemkin I, Jordan R, Papadakis C
RgGuinier 11.2 nm
Dmax 37.6 nm

SASDPM8 – Molecular brush (PiPOx239-g-PnPrOx14) in a good solvent at concentration c=10 mg/mL

PiPOx239-g-PnPrOx14 experimental SAS data
DAMMIF model
Sample: PiPOx239-g-PnPrOx14 monomer, 413 kDa
Buffer: ethanol, pH: 7.3
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Jun 12
Rigid-to-Flexible Transition in a Molecular Brush in a Good Solvent at a Semidilute Concentration Langmuir 38(17):5226-5236 (2022)
Kang J, Sachse C, Ko C, Schroer M, Vela S, Molodenskiy D, Kohlbrecher J, Bushuev N, Gumerov R, Potemkin I, Jordan R, Papadakis C
RgGuinier 8.6 nm
Dmax 34.3 nm

SASDPN8 – Molecular brush (PiPOx239-g-PnPrOx14) in a good solvent at concentration c=46 mg/mL

PiPOx239-g-PnPrOx14 experimental SAS data
DAMMIF model
Sample: PiPOx239-g-PnPrOx14 monomer, 413 kDa
Buffer: ethanol, pH: 7.3
Experiment: SAXS data collected at EMBL P12, PETRA III on 2021 Jun 12
Rigid-to-Flexible Transition in a Molecular Brush in a Good Solvent at a Semidilute Concentration Langmuir 38(17):5226-5236 (2022)
Kang J, Sachse C, Ko C, Schroer M, Vela S, Molodenskiy D, Kohlbrecher J, Bushuev N, Gumerov R, Potemkin I, Jordan R, Papadakis C
RgGuinier 7.2 nm
Dmax 18.5 nm

SASDMM4 – Hepatitis C virus 5BSL3.2 RNA subdomain

5BSL3.2 experimental SAS data
DAMFILT model
Sample: 5BSL3.2 monomer, 15 kDa Hepatitis C virus … RNA
Buffer: 10 mM Tris-HCl, 0.1 mM EDTA, pH: 7
Experiment: SAXS data collected at Rigaku BioSAXS-1000, NIDDK, NIH on 2019 Jun 2
The low-resolution structural models of hepatitis C virus RNA subdomain 5BSL3.2 and its distal complex with domain 3'X point to conserved regulatory mechanisms within the Flaviviridae family. Nucleic Acids Res (2022)
Castillo-Martínez J, Fan L, Szewczyk MP, Wang YX, Gallego J
RgGuinier 2.5 nm
Dmax 7.6 nm
VolumePorod 29 nm3

SASDMN4 – Hepatitis C virus 5BSL3.2 RNA subdomain

5BSL3.2 experimental SAS data
DAMFILT model
Sample: 5BSL3.2 monomer, 15 kDa Hepatitis C virus … RNA
Buffer: 10 mM Tris-HCl, 6 mM MgCl2, pH: 7
Experiment: SAXS data collected at Rigaku BioSAXS-1000, NIDDK, NIH on 2019 Jun 2
The low-resolution structural models of hepatitis C virus RNA subdomain 5BSL3.2 and its distal complex with domain 3'X point to conserved regulatory mechanisms within the Flaviviridae family. Nucleic Acids Res (2022)
Castillo-Martínez J, Fan L, Szewczyk MP, Wang YX, Gallego J
RgGuinier 2.1 nm
Dmax 7.0 nm
VolumePorod 22 nm3

SASDMP4 – Hepatitis C virus RNA Domain 3'X mutant

Domain 3'X mutant experimental SAS data
DAMFILT model
Sample: Domain 3'X mutant monomer, 32 kDa Hepatitis C virus … RNA
Buffer: 10 mM Tris-HCl, 0.1 mM EDTA, pH: 7
Experiment: SAXS data collected at Rigaku BioSAXS-1000, NIDDK, NIH on 2019 Jun 2
The low-resolution structural models of hepatitis C virus RNA subdomain 5BSL3.2 and its distal complex with domain 3'X point to conserved regulatory mechanisms within the Flaviviridae family. Nucleic Acids Res (2022)
Castillo-Martínez J, Fan L, Szewczyk MP, Wang YX, Gallego J
RgGuinier 4.1 nm
Dmax 14.7 nm
VolumePorod 70 nm3

SASDMQ4 – Hepatitis C virus RNA Domain 3'X mutant

Domain 3'X mutant experimental SAS data
DAMFILT model
Sample: Domain 3'X mutant monomer, 32 kDa Hepatitis C virus … RNA
Buffer: 10 mM Tris-HCl, 6 mM MgCl2, pH: 7
Experiment: SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2019 Jun 2
The low-resolution structural models of hepatitis C virus RNA subdomain 5BSL3.2 and its distal complex with domain 3'X point to conserved regulatory mechanisms within the Flaviviridae family. Nucleic Acids Res (2022)
Castillo-Martínez J, Fan L, Szewczyk MP, Wang YX, Gallego J
RgGuinier 3.3 nm
Dmax 14.2 nm
VolumePorod 50 nm3

SASDMR4 – Hepatitis C virus RNA Domain 3'X mutant - Subdomain 5BSL3.2 complex

Domain 3'X mutant - 5BSL3.2 complex experimental SAS data
DAMFILT model
Sample: Domain 3'X mutant - 5BSL3.2 complex monomer, 42 kDa Hepatitis C virus … RNA
Buffer: 10 mM Tris-HCl, 6 mM MgCl2, pH: 7
Experiment: SAXS data collected at Rigaku BioSAXS-1000, NIDDK, NIH on 2019 Jun 2
The low-resolution structural models of hepatitis C virus RNA subdomain 5BSL3.2 and its distal complex with domain 3'X point to conserved regulatory mechanisms within the Flaviviridae family. Nucleic Acids Res (2022)
Castillo-Martínez J, Fan L, Szewczyk MP, Wang YX, Gallego J
RgGuinier 4.2 nm
Dmax 17.0 nm
VolumePorod 88 nm3