Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDNG3 – Lectin nano-block dimer of WA20-ΔN3ACG

Lectin nano-block WA20-ΔN3ACG experimental SAS data

Sample:	Lectin nano-block WA20-ΔN3ACG dimer, 58 kDa protein
Buffer:	20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Oct 31

Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans International Journal of Molecular Sciences 23(2):676 (2022)
Irumagawa S, Hiemori K, Saito S, Tateno H, Arai R

R_g^Guinier	4.1	nm
D_max	21.6	nm
Volume^Porod	87	nm³

SASDLP2 – Outer membrane associated protein, FopA dimer in Tris-HCl, NaCl and n-Dodecyl beta-D-maltoside

Francisella tularensis outer membrane protein A experimental SAS data

Sample:	Francisella tularensis outer membrane protein A dimer, 80 kDa Francisella tularensis subsp. … protein
Buffer:	20 mM Tris, 150 mM NaCl, 0.05% B-DDM, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2019 Mar 20

Structural and biophysical properties of FopA, a major outer membrane protein of Francisella tularensis. PLoS One 17(8):e0267370 (2022)
Nagaratnam N, Martin-Garcia JM, Yang JH, Goode MR, Ketawala G, Craciunescu FM, Zook JD, Sonowal M, Williams D, Grant TD, Fromme R, Hansen DT, Fromme P

R_g^Guinier	4.4	nm
D_max	16.0	nm
Volume^Porod	330	nm³

SASDNA3 – Association of the CPAP N-termini coiled-coil domain with the CP110 C-termini coiled-coil region

centrosomal-P4.1-associated-proteinCentriolar coiled-coil protein of 110 kDa experimental SAS data

Sample:	Centrosomal-P4.1-associated-protein monomer, 12 kDa Homo sapiens protein Centriolar coiled-coil protein of 110 kDa dimer, 20 kDa Homo sapiens protein
Buffer:	50 mM HEPES, pH 7.5, 100 mM NaCl, 1 mM DTT, 1 mM MgCl2, pH: 7.5
Experiment:	SAXS data collected at B21, Diamond Light Source on 2019 Feb 23

Centriolar cap proteins CP110 and CPAP control slow elongation of microtubule plus ends. J Cell Biol 224(3) (2025)
Iyer SS, Chen F, Ogunmolu FE, Moradi S, Volkov VA, van Grinsven EJ, van Hoorn C, Wu J, Andrea N, Hua S, Jiang K, Vakonakis I, Potočnjak M, Herzog F, Gigant B, Gudimchuk N, Stecker KE, Dogterom M, Steinmetz MO, Akhmanova A

R_g^Guinier	3.5	nm
D_max	12.2	nm
Volume^Porod	35	nm³

SASDNB3 – Homodimerisation of the CP110 C-terminus coiled-coil domain

Centriolar coiled-coil protein of 110 kDa experimental SAS data

Sample:	Centriolar coiled-coil protein of 110 kDa dimer, 20 kDa Homo sapiens protein
Buffer:	50 mM HEPES, pH 7.5, 100 mM NaCl, 1 mM DTT, 1 mM MgCl2, pH: 7.5
Experiment:	SAXS data collected at B21, Diamond Light Source on 2019 Feb 23

R_g^Guinier	3.5	nm
D_max	12.5	nm
Volume^Porod	33	nm³

SASDMK7 – HomA outer membrane protein

HomA outer membrane protein experimental SAS data

Sample:	HomA outer membrane protein dimer, 146 kDa Helicobacter pylori protein
Buffer:	20 mM Tris-Cl, 200 mM NaCl, 5 mM β-mercaptoethanol, pH: 8
Experiment:	SAXS data collected at BL-18, INDUS-2 on 2021 Feb 2

Biophysical characterization of the homodimers of HomA and HomB, outer membrane proteins of Helicobacter pylori. Sci Rep 11(1):24471 (2021)
Tamrakar A, Singh R, Kumar A, Makde RD, Ashish, Kodgire P

R_g^Guinier	8.3	nm
D_max	28.2	nm
Volume^Porod	426	nm³

SASDML7 – HomB outer membrane protein

HomB outer membrane protein experimental SAS data

Sample:	HomB outer membrane protein dimer, 148 kDa Helicobacter pylori protein
Buffer:	20 mM Tris-Cl, 200 mM NaCl, 5 mM β-mercaptoethanol, pH: 8
Experiment:	SAXS data collected at BL-18, INDUS-2 on 2021 Feb 2

R_g^Guinier	8.2	nm
D_max	27.1	nm
Volume^Porod	500	nm³

SASDMR6 – 5-10-5 gapmer phosphorothioate antisense oligonucleotide

5-10-5 gapmer phosphorothioate antisense oligonucleotide experimental SAS data

Sample:	5-10-5 gapmer phosphorothioate antisense oligonucleotide dimer, 14 kDa
Buffer:	20 mM Tris-Cl (pH 7.5), 250 mM KCl, 50 mM L-proline, 0.5 mM EDTA, pH: 7.5
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2015 Apr 28

Structural basis of dimerization and nucleic acid binding of human DBHS proteins NONO and PSPC1. Nucleic Acids Res (2021)
Knott GJ, Chong YS, Passon DM, Liang XH, Deplazes E, Conte MR, Marshall AC, Lee M, Fox AH, Bond CS

R_g^Guinier	1.8	nm
D_max	8.5	nm
Volume^Porod	15	nm³

SASDJ89 – Sensory rhodopsin II - transducer complex (NpSRII/NpHtrII) in detergent at 1400 mM NaCl studied with SANS

Sensory rhodopsin II from Natronbacterium pharaonisSensory rhodopsin II transducer from Natronomonas pharaonis experimental SAS data

Sample:	Sensory rhodopsin II from Natronbacterium pharaonis dimer, 53 kDa Natronomonas pharaonis protein Sensory rhodopsin II transducer from Natronomonas pharaonis dimer, 116 kDa Natronomonas pharaonis protein
Buffer:	1400 mM NaCl, 49.4 mM Na/Na-Pi, 1.0 mM EDTA, 0.05% DDM (D2O buffer), pH: 8
Experiment:	SANS data collected at YuMO SANS TOF spectrometer, IBR-2, Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research on 2019 Feb 10

Ambiguities in and completeness of SAS data analysis of membrane proteins: the case of the sensory rhodopsin II–transducer complex Acta Crystallographica Section D Structural Biology 77(11) (2021)
Ryzhykau Y, Vlasov A, Orekhov P, Rulev M, Rogachev A, Vlasova A, Kazantsev A, Verteletskiy D, Skoi V, Brennich M, Pernot P, Murugova T, Gordeliy V, Kuklin A

R_g^Guinier	8.6	nm
D_max	39.0	nm

SASDJ99 – Sensory rhodopsin II - transducer complex (NpSRII/NpHtrII) in detergent at 2800 mM NaCl studied with SANS

Sample:	Sensory rhodopsin II from Natronbacterium pharaonis dimer, 53 kDa Natronomonas pharaonis protein Sensory rhodopsin II transducer from Natronomonas pharaonis dimer, 116 kDa Natronomonas pharaonis protein
Buffer:	2800 mM NaCl, 76.6 mM Na/Na-Pi, 1.0 mM EDTA, 0.05% DDM (D2O buffer), pH: 8
Experiment:	SANS data collected at YuMO SANS TOF spectrometer, IBR-2, Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research on 2019 Feb 10

R_g^Guinier	9.0	nm
D_max	39.0	nm

SASDJA9 – Sensory rhodopsin II - transducer complex (NpSRII/NpHtrII) in detergent at 4000 mM NaCl studied with SANS

Sample:	Sensory rhodopsin II from Natronbacterium pharaonis dimer, 53 kDa Natronomonas pharaonis protein Sensory rhodopsin II transducer from Natronomonas pharaonis dimer, 116 kDa Natronomonas pharaonis protein
Buffer:	4000 mM NaCl, 100 mM Na/Na-Pi, 1.0 mM EDTA, 0.05% DDM (D2O buffer), pH: 8
Experiment:	SANS data collected at YuMO SANS TOF spectrometer, IBR-2, Frank Laboratory of Neutron Physics, Joint Institute for Nuclear Research on 2019 Jan 25

R_g^Guinier	10.4	nm
D_max	39.0	nm

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