Browse by MODEL: Ab initio only

SASDBK9 – Geobacillus stearothermophilus DnaB full-length

Geobacillus stearothermophilus DnaB full-length experimental SAS data
GASBOR model
Sample: Geobacillus stearothermophilus DnaB full-length tetramer, 214 kDa Geobacillus stearothermophilus protein
Buffer: 20 mM Tris, 300 mM NaCl and 5 mM β-ME, pH: 8
Experiment: SAXS data collected at 23A, Taiwan Photon Source, NSRRC on 2015 Mar 12
Structural analyses of the bacterial primosomal protein DnaB reveal that it is a tetramer and forms a complex with a primosomal re-initiation protein. J Biol Chem 292(38):15744-15757 (2017)
Li YC, Naveen V, Lin MG, Hsiao CD
RgGuinier 5.7 nm
Dmax 20.0 nm
VolumePorod 432 nm3

SASDX22 – chloroplast trigger factor from Chlamydomonas reinhardtii

peptidylprolyl isomerase experimental SAS data
DAMMIN model
Sample: Peptidylprolyl isomerase monomer, 54 kDa Chlamydomonas reinhardtii protein
Buffer: 20 mM Tris pH 7.5, 150 mM KCl, pH:
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 30
Structural and molecular comparison of bacterial and eukaryotic trigger factors. Sci Rep 7(1):10680 (2017)
Ries F, Carius Y, Rohr M, Gries K, Keller S, Lancaster CRD, Willmund F
RgGuinier 3.9 nm
Dmax 12.5 nm
VolumePorod 103 nm3

SASDX32 – chloroplast trigger factor from Arabidopsis thaliana

Trigger factor-like protein TIG, Chloroplastic experimental SAS data
DAMMIN model
Sample: Trigger factor-like protein TIG, Chloroplastic monomer, 53 kDa Arabidopsis thaliana protein
Buffer: 20 mM Tris pH 7.5, 150 mM KCl, pH:
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 30
Structural and molecular comparison of bacterial and eukaryotic trigger factors. Sci Rep 7(1):10680 (2017)
Ries F, Carius Y, Rohr M, Gries K, Keller S, Lancaster CRD, Willmund F
RgGuinier 3.8 nm
Dmax 12.7 nm
VolumePorod 104 nm3

SASDBF2 – Solution structure of 40bp long dsDNA-Sa Oligonucleotide

40bp long dsDNA-Sa Oligonucleotide experimental SAS data
DAMMIN model
Sample: 40bp long dsDNA-Sa Oligonucleotide monomer, 25 kDa DNA
Buffer: 0.5 x Tris/Borate/EDTA (TBE), pH:
Experiment: SAXS data collected at BM29, ESRF on 2015 Aug 28
Wing phosphorylation is a major functional determinant of the Lrs14-type biofilm and motility regulator AbfR1 in Sulfolobus acidocaldarius. Mol Microbiol 105(5):777-793 (2017)
Li L, Banerjee A, Bischof LF, Maklad HR, Hoffmann L, Henche AL, Veliz F, Bildl W, Schulte U, Orell A, Essen LO, Peeters E, Albers SV
RgGuinier 3.6 nm
Dmax 12.0 nm

SASDBG2 – Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family).

Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). experimental SAS data
DAMMIN model
Sample: Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). dimer, 26 kDa Sulfolobus acidocaldarius protein
Buffer: 20 mM HEPES 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2015 Aug 27
Wing phosphorylation is a major functional determinant of the Lrs14-type biofilm and motility regulator AbfR1 in Sulfolobus acidocaldarius. Mol Microbiol 105(5):777-793 (2017)
Li L, Banerjee A, Bischof LF, Maklad HR, Hoffmann L, Henche AL, Veliz F, Bildl W, Schulte U, Orell A, Essen LO, Peeters E, Albers SV
RgGuinier 2.6 nm
Dmax 9.8 nm
VolumePorod 47 nm3

SASDBH2 – Mutant archaeal biofilm regulator 1 (ABfR1) phosphomimic Y84E S87D

Archaeal biofilm regulator 1 (AbfR1) mutant Y84E S87D phosphomimic mutant experimental SAS data
DAMMIN model
Sample: Archaeal biofilm regulator 1 (AbfR1) mutant Y84E S87D phosphomimic mutant dimer, 26 kDa Sulfolobus acidocaldarius protein
Buffer: 20 mM HEPES 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2015 Aug 27
Wing phosphorylation is a major functional determinant of the Lrs14-type biofilm and motility regulator AbfR1 in Sulfolobus acidocaldarius. Mol Microbiol 105(5):777-793 (2017)
Li L, Banerjee A, Bischof LF, Maklad HR, Hoffmann L, Henche AL, Veliz F, Bildl W, Schulte U, Orell A, Essen LO, Peeters E, Albers SV
RgGuinier 2.6 nm
Dmax 9.5 nm
VolumePorod 51 nm3

SASDBJ2 – Wild-type archaeal biofilm regulator 1 (ABfR1) bound to 40bp dsDNA-Sa oligonucleotide.

40bp long dsDNA-Sa OligonucleotideWild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). experimental SAS data
DAMMIN model
Sample: 40bp long dsDNA-Sa Oligonucleotide monomer, 25 kDa DNA
Wild-type archaeal biofilm regulator 1 (ABfR1: Transcriptional regulator ArsR family). dimer, 26 kDa Sulfolobus acidocaldarius protein
Buffer: 0.5 x Tris/Borate/EDTA (TBE), pH:
Experiment: SAXS data collected at BM29, ESRF on 2015 Aug 27
Wing phosphorylation is a major functional determinant of the Lrs14-type biofilm and motility regulator AbfR1 in Sulfolobus acidocaldarius. Mol Microbiol 105(5):777-793 (2017)
Li L, Banerjee A, Bischof LF, Maklad HR, Hoffmann L, Henche AL, Veliz F, Bildl W, Schulte U, Orell A, Essen LO, Peeters E, Albers SV
RgGuinier 3.0 nm
Dmax 11.8 nm

SASDBM7 – Subdomain SL1 of hepatitis C virus RNA domain 3'X at low ionic strength

Subdomain SL1 of hepatitis C virus experimental SAS data
DAMMIN model
Sample: Subdomain SL1 of hepatitis C virus monomer, 15 kDa Hepatitis C virus RNA
Buffer: 10mM Tris 0.1 mM EDTA, pH: 7
Experiment: SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2015 Nov 11
Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states. RNA 23(9):1465-1476 (2017)
Cantero-Camacho Á, Fan L, Wang YX, Gallego J
RgGuinier 2.3 nm
Dmax 8.1 nm

SASDBN7 – Subdomain SL2' of hepatitis C virus RNA domain 3'X at low ionic strength

Subdomain SL2' of hepatitis C virus domain 3'X experimental SAS data
DAMMIN model
Sample: Subdomain SL2' of hepatitis C virus domain 3'X monomer, 18 kDa Hepatitis C virus RNA
Buffer: 10mM Tris 0.1 mM EDTA, pH: 7
Experiment: SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2015 Nov 11
Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states. RNA 23(9):1465-1476 (2017)
Cantero-Camacho Á, Fan L, Wang YX, Gallego J
RgGuinier 2.8 nm
Dmax 10.0 nm

SASDBP7 – Domain 3'X of hepatitis C virus RNA at low ionic strength

Domain 3'X of hepatitis C virus experimental SAS data
DAMMIN model
Sample: Domain 3'X of hepatitis C virus monomer, 32 kDa Hepatitis C virus RNA
Buffer: 10mM Tris 0.1 mM EDTA, pH: 7
Experiment: SAXS data collected at 12-ID-B SAXS/WAXS, Advanced Photon Source (APS), Argonne National Laboratory on 2015 Nov 11
Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states. RNA 23(9):1465-1476 (2017)
Cantero-Camacho Á, Fan L, Wang YX, Gallego J
RgGuinier 3.7 nm
Dmax 14.8 nm