Browse by MODEL: Hybrid

SASDCU8 – Uncharacterized protein CTHT_0072540 (WD40) from Chaetomium thermophilum

hypothetical protein CTHT_0072540 experimental SAS data
SASREF model
Sample: Hypothetical protein CTHT_0072540 monomer, 35 kDa Chaetomium thermophilum protein
Buffer: 20 mM HEPES, 100 mM NaCl, 2 mM β-mercaptoethanol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Jul 19
Prp19/Pso4 Is an Autoinhibited Ubiquitin Ligase Activated by Stepwise Assembly of Three Splicing Factors. Mol Cell 69(6):979-992.e6 (2018)
de Moura TR, Mozaffari-Jovin S, Szabó CZK, Schmitzová J, Dybkov O, Cretu C, Kachala M, Svergun D, Urlaub H, Lührmann R, Pena V
RgGuinier 2.3 nm
Dmax 5.8 nm
VolumePorod 68 nm3

SASDC57 – Deoxyuridine 5'-triphosphate nucleotidohydrolase

Deoxyuridine 5'-triphosphate nucleotidohydrolase experimental SAS data
DAMMIF model
Sample: Deoxyuridine 5'-triphosphate nucleotidohydrolase trimer, 54 kDa Homo sapiens protein
Buffer: 50 mM HEPES 300 mM NaCl 5 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Jul 9
Structural model of human dUTPase in complex with a novel proteinaceous inhibitor. Sci Rep 8(1):4326 (2018)
Nyíri K, Mertens HDT, Tihanyi B, Nagy GN, Kőhegyi B, Matejka J, Harris MJ, Szabó JE, Papp-Kádár V, Németh-Pongrácz V, Ozohanics O, Vékey K, Svergun DI, Borysik AJ, Vértessy BG
RgGuinier 3.0 nm
Dmax 10.0 nm
VolumePorod 117 nm3

SASDC67 – SaPIbov1 pathogenicity island repressor

SaPIbov1 pathogenicity island repressor experimental SAS data
OTHER model
Sample: SaPIbov1 pathogenicity island repressor dimer, 64 kDa Staphylococcus aureus protein
Buffer: 50 mM HEPES 300 mM NaCl 5 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Jul 9
Structural model of human dUTPase in complex with a novel proteinaceous inhibitor. Sci Rep 8(1):4326 (2018)
Nyíri K, Mertens HDT, Tihanyi B, Nagy GN, Kőhegyi B, Matejka J, Harris MJ, Szabó JE, Papp-Kádár V, Németh-Pongrácz V, Ozohanics O, Vékey K, Svergun DI, Borysik AJ, Vértessy BG
RgGuinier 3.3 nm
Dmax 10.5 nm
VolumePorod 100 nm3

SASDC77 – Deoxyuridine 5'-triphosphate nucleotidohydrolase complex with SaPIbov1 pathogenicity island repressor [3:3] (SEC-SAXS)

Deoxyuridine 5'-triphosphate nucleotidohydrolaseSaPIbov1 pathogenicity island repressor experimental SAS data
CORAL model
Sample: Deoxyuridine 5'-triphosphate nucleotidohydrolase trimer, 54 kDa Homo sapiens protein
SaPIbov1 pathogenicity island repressor dimer, 64 kDa Staphylococcus aureus protein
Buffer: 50 mM HEPES 300 mM NaCl 5 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Jul 10
Structural model of human dUTPase in complex with a novel proteinaceous inhibitor. Sci Rep 8(1):4326 (2018)
Nyíri K, Mertens HDT, Tihanyi B, Nagy GN, Kőhegyi B, Matejka J, Harris MJ, Szabó JE, Papp-Kádár V, Németh-Pongrácz V, Ozohanics O, Vékey K, Svergun DI, Borysik AJ, Vértessy BG
RgGuinier 4.4 nm
Dmax 17.0 nm
VolumePorod 227 nm3

SASDC87 – Deoxyuridine 5'-triphosphate nucleotidohydrolase complex with SaPIbov1 pathogenicity island repressor [3:2] (SEC-SAXS)

Deoxyuridine 5'-triphosphate nucleotidohydrolaseSaPIbov1 pathogenicity island repressor experimental SAS data
DAMMIF model
Sample: Deoxyuridine 5'-triphosphate nucleotidohydrolase trimer, 54 kDa Homo sapiens protein
SaPIbov1 pathogenicity island repressor dimer, 64 kDa Staphylococcus aureus protein
Buffer: 50 mM HEPES 300 mM NaCl 5 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Jul 10
Structural model of human dUTPase in complex with a novel proteinaceous inhibitor. Sci Rep 8(1):4326 (2018)
Nyíri K, Mertens HDT, Tihanyi B, Nagy GN, Kőhegyi B, Matejka J, Harris MJ, Szabó JE, Papp-Kádár V, Németh-Pongrácz V, Ozohanics O, Vékey K, Svergun DI, Borysik AJ, Vértessy BG
RgGuinier 3.8 nm
Dmax 14.0 nm
VolumePorod 190 nm3

SASDBP9 – Human Hsp90 co-chaperone Cdc37 protein (CD37)

Hsp90 co-chaperone Cdc37 experimental SAS data
CORAL model
Sample: Hsp90 co-chaperone Cdc37 monomer, 44 kDa Homo sapiens protein
Buffer: 25 mM Tris.Cl, 150 mM NaCl, 5% (v/v) glycerol, 1 mM TCEP, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Jul 10
Disease Variants of FGFR3 Reveal Molecular Basis for the Recognition and Additional Roles for Cdc37 in Hsp90 Chaperone System. Structure 26(3):446-458.e8 (2018)
Bunney TD, Inglis AJ, Sanfelice D, Farrell B, Kerr CJ, Thompson GS, Masson GR, Thiyagarajan N, Svergun DI, Williams RL, Breeze AL, Katan M
RgGuinier 4.0 nm
Dmax 15.5 nm
VolumePorod 106 nm3

SASDBQ9 – Human Hsp90 co-chaperone Cdc37 (CD37) in complex with fibroblast growth factor receptor 3

Hsp90 co-chaperone Cdc37Fibroblast growth factor receptor 3 experimental SAS data
CORAL model
Sample: Hsp90 co-chaperone Cdc37 monomer, 44 kDa Homo sapiens protein
Fibroblast growth factor receptor 3 monomer, 35 kDa Homo sapiens protein
Buffer: 25 mM Tris.Cl, 150 mM NaCl, 5% (v/v) glycerol, 1 mM TCEP, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Jul 10
Disease Variants of FGFR3 Reveal Molecular Basis for the Recognition and Additional Roles for Cdc37 in Hsp90 Chaperone System. Structure 26(3):446-458.e8 (2018)
Bunney TD, Inglis AJ, Sanfelice D, Farrell B, Kerr CJ, Thompson GS, Masson GR, Thiyagarajan N, Svergun DI, Williams RL, Breeze AL, Katan M
RgGuinier 4.7 nm
Dmax 19.5 nm
VolumePorod 161 nm3

SASDBR9 – Human fibroblast growth factor receptor 3, from SEC-SAXS

Fibroblast growth factor receptor 3 experimental SAS data
CORAL model
Sample: Fibroblast growth factor receptor 3 monomer, 35 kDa Homo sapiens protein
Buffer: 25 mM Tris.Cl, 150 mM NaCl, 5% (v/v) glycerol, 1 mM TCEP, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Jul 10
Disease Variants of FGFR3 Reveal Molecular Basis for the Recognition and Additional Roles for Cdc37 in Hsp90 Chaperone System. Structure 26(3):446-458.e8 (2018)
Bunney TD, Inglis AJ, Sanfelice D, Farrell B, Kerr CJ, Thompson GS, Masson GR, Thiyagarajan N, Svergun DI, Williams RL, Breeze AL, Katan M
RgGuinier 2.4 nm
Dmax 8.3 nm
VolumePorod 59 nm3

SASDCA3 – Zinc finger and BTB domain-containing protein 38 (ZBTB38) complexed with methylated C-terminal ZBTB38 binding sequence

Zinc finger and BTB domain-containing protein 38methylated C-terminal ZBTB38 binding sequence experimental SAS data
MONSA model
Sample: Zinc finger and BTB domain-containing protein 38 monomer, 17 kDa Homo sapiens protein
Methylated C-terminal ZBTB38 binding sequence monomer, 17 kDa DNA
Buffer: 10 mM Tris, 1 mM tris(2-carboxy-ethyl)phosphine (TCEP), 0.05% NaN3, 10% D2O, pH: 6.8
Experiment: SAXS data collected at Anton Paar SAXSess, Department of Chemistry, University of Utah on 2016 Nov 11
The C-Terminal Zinc Fingers of ZBTB38 are Novel Selective Readers of DNA Methylation. J Mol Biol 430(3):258-271 (2018)
Pozner A, Hudson NO, Trewhella J, Terooatea TW, Miller SA, Buck-Koehntop BA
RgGuinier 2.5 nm
Dmax 8.2 nm
VolumePorod 50 nm3

SASDLM4 – Prebiotic-producing GH10 xylanase (RmXyn10A, full length)

Prebiotic-producing GH10 xylanase (RmXyn10A, full length) experimental SAS data
BUNCH model
Sample: Prebiotic-producing GH10 xylanase (RmXyn10A, full length) monomer, 108 kDa Rhodothermus marinus protein
Buffer: 50 mM TRIS, 0.5 M NaCl, pH: 7.4
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2004 Mar 12
Structural insights of RmXyn10A - A prebiotic-producing GH10 xylanase with a non-conserved aglycone binding region. Biochim Biophys Acta Proteins Proteom 1866(2):292-306 (2018)
Aronsson A, Güler F, Petoukhov MV, Crennell SJ, Svergun DI, Linares-Pastén JA, Nordberg Karlsson E
RgGuinier 3.9 nm
Dmax 12.5 nm
VolumePorod 170 nm3