Browse by MODEL: Hybrid

SASDSG7 – Human Codanin1 (C-terminus): analysis of first oligomeric SEC peak

Codanin-1 experimental SAS data
ALPHAFOLD model
Sample: Codanin-1 monomer, 25 kDa Homo sapiens protein
Buffer: 20 mM Tris HCl, 150 mM NaCl, pH: 8
Experiment: SAXS data collected at Anton Paar SAXSpoint 2.0, Institute of Biotechnology, Czech Academy of Sciences/Centre of Molecular Structure on 2022 Mar 5
Structural insights into inherited anemia CDA-I: disease-associated mutations disrupt Codanin1-CDIN1 complex
Tomas Brom
RgGuinier 4.1 nm
Dmax 10.7 nm
VolumePorod 220 nm3

SASDPC4 – Complex of Rhodopseudomonas palustris pAgo with TIR-like effector protein

TIR domain-containing proteinUncharacterized protein (PIWI) experimental SAS data
ALPHAFOLD model
Sample: TIR domain-containing protein monomer, 57 kDa Rhodopseudomonas palustris (strain … protein
Uncharacterized protein (PIWI) monomer, 56 kDa Rhodopseudomonas palustris (strain … protein
Buffer: 20 mM Tris-HCl, pH8.0, 200 mM NaCl, 5 mM MgCl2, 2 mM β-mercaptoethanol, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Sep 27
Complex of Rhodopseudomonas palustris pAgo with TIR-like effector protein
Elena Manakova
RgGuinier 3.6 nm
Dmax 12.0 nm
VolumePorod 192 nm3

SASDQZ7 – Ubiquitin-specific protease 14 (USP14)

Ubiquitin carboxyl-terminal hydrolase 14 experimental SAS data
OTHER [STATIC IMAGE] model
Sample: Ubiquitin carboxyl-terminal hydrolase 14 monomer, 56 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Oct 18
Transient interdomain interactions in free USP14 shape its conformational ensemble. Protein Sci 33(5):e4975 (2024)
Salomonsson J, Wallner B, Sjöstrand L, D'Arcy P, Sunnerhagen M, Ahlner A
RgGuinier 3.1 nm
Dmax 12.5 nm
VolumePorod 111 nm3

SASDQ28 – Catalytic domain of ubiquitin-specific protease 14 (USP14)

Ubiquitin carboxyl-terminal hydrolase 14 experimental SAS data
DAMMIN model
Sample: Ubiquitin carboxyl-terminal hydrolase 14 monomer, 46 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Jul 5
Transient interdomain interactions in free USP14 shape its conformational ensemble. Protein Sci 33(5):e4975 (2024)
Salomonsson J, Wallner B, Sjöstrand L, D'Arcy P, Sunnerhagen M, Ahlner A
RgGuinier 2.6 nm
Dmax 8.3 nm
VolumePorod 88 nm3

SASDU93 – multimodular GH16_3 containing a CBM and a catalytic domain

Glycosyl hydrolase, family 16 experimental SAS data
DADIMODO model
Sample: Glycosyl hydrolase, family 16 monomer, 58 kDa Christiangramia forsetii (strain … protein
Buffer: 10 mM MOPS, 100 mM NaCl, pH: 7.8
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Dec 1
Unveiling the role of novel carbohydrate-binding modules in laminarin interaction of multimodular proteins from marine Bacteroidota during phytoplankton blooms. Environ Microbiol 26(5):e16624 (2024)
Zühlke MK, Ficko-Blean E, Bartosik D, Terrapon N, Jeudy A, Jam M, Wang F, Welsch N, Dürwald A, Martin LT, Larocque R, Jouanneau D, Eisenack T, Thomas F, Trautwein-Schult A, Teeling H, Becher D, Schweder T, Czjzek M
RgGuinier 3.8 nm
Dmax 12.9 nm
VolumePorod 76 nm3

SASDUA3 – Surface glycan binding protein (Cf-SGBP) from Christiangramia forsetii

PKD domain-containing protein experimental SAS data
DADIMODO model
Sample: PKD domain-containing protein monomer, 96 kDa Christiangramia forsetii (strain … protein
Buffer: 10 mM MOPS, 100 mM NaCl, pH: 7.8
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Dec 1
Unveiling the role of novel carbohydrate-binding modules in laminarin interaction of multimodular proteins from marine Bacteroidota during phytoplankton blooms. Environ Microbiol 26(5):e16624 (2024)
Zühlke MK, Ficko-Blean E, Bartosik D, Terrapon N, Jeudy A, Jam M, Wang F, Welsch N, Dürwald A, Martin LT, Larocque R, Jouanneau D, Eisenack T, Thomas F, Trautwein-Schult A, Teeling H, Becher D, Schweder T, Czjzek M
RgGuinier 5.0 nm
Dmax 17.8 nm
VolumePorod 138 nm3

SASDT23 – Teneurin-3 A1B1 isoform in 2 mM calcium - 0.62 mg/mL

Isoform A1B1 of Teneurin-3 experimental SAS data
CORAL model
Sample: Isoform A1B1 of Teneurin-3 dimer, 545 kDa Mus musculus protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM CaCl2, pH: 7.8
Experiment: SAXS data collected at BM29, ESRF on 2022 Sep 10
Alternative splicing controls teneurin-3 compact dimer formation for neuronal recognition Nature Communications 15(1) (2024)
Gogou C, Beugelink J, Frias C, Kresik L, Jaroszynska N, Drescher U, Janssen B, Hindges R, Meijer D
RgGuinier 7.9 nm
Dmax 32.0 nm
VolumePorod 1129 nm3

SASDT63 – Teneurin-3 A0B0 isoform in 2 mM calcium - 0.46 mg/mL

Isoform A0B0 of Teneurin-3 experimental SAS data
CORAL model
Sample: Isoform A0B0 of Teneurin-3 dimer, 526 kDa Mus musculus protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM CaCl2, pH: 7.8
Experiment: SAXS data collected at BM29, ESRF on 2022 Sep 10
Alternative splicing controls teneurin-3 compact dimer formation for neuronal recognition Nature Communications 15(1) (2024)
Gogou C, Beugelink J, Frias C, Kresik L, Jaroszynska N, Drescher U, Janssen B, Hindges R, Meijer D
RgGuinier 7.3 nm
Dmax 31.0 nm
VolumePorod 1057 nm3

SASDTB3 – Teneurin-3 A0B1 isoform in 2 mM calcium - 0.72 mg/mL

Isoform A0B1 of Teneurin-3 experimental SAS data
CORAL model
Sample: Isoform A0B1 of Teneurin-3 dimer, 545 kDa Mus musculus protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM CaCl2, pH: 7.8
Experiment: SAXS data collected at BM29, ESRF on 2022 Sep 10
Alternative splicing controls teneurin-3 compact dimer formation for neuronal recognition Nature Communications 15(1) (2024)
Gogou C, Beugelink J, Frias C, Kresik L, Jaroszynska N, Drescher U, Janssen B, Hindges R, Meijer D
RgGuinier 8.0 nm
Dmax 32.0 nm
VolumePorod 1053 nm3

SASDTG3 – Teneurin-3 A1B0 isoform in 2 mM calcium - 0.74 mg/mL

Isoform A1B0 of Teneurin-3 experimental SAS data
CORAL model
Sample: Isoform A1B0 of Teneurin-3 dimer, 541 kDa Mus musculus protein
Buffer: 20 mM HEPES, 150 mM NaCl, 2 mM CaCl2, pH: 7.8
Experiment: SAXS data collected at BM29, ESRF on 2022 Sep 10
Alternative splicing controls teneurin-3 compact dimer formation for neuronal recognition Nature Communications 15(1) (2024)
Gogou C, Beugelink J, Frias C, Kresik L, Jaroszynska N, Drescher U, Janssen B, Hindges R, Meijer D
RgGuinier 7.7 nm
Dmax 30.0 nm
VolumePorod 1089 nm3