Browse by MODEL: Hybrid

SASDJQ5 – Chitin-binding protein CbpD (Pseudomonas aeruginosa) at 24 °C

Chitin-binding protein CbpD experimental SAS data
OTHER model
Sample: Chitin-binding protein CbpD monomer, 39 kDa Pseudomonas aeruginosa protein
Buffer: 15 mM Tris-HCl 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at Bruker Nanostar with InCoatec Cu microsource, RECX, University of Oslo on 2019 Jul 19
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. Nat Commun 12(1):1230 (2021)
Askarian F, Uchiyama S, Masson H, Sørensen HV, Golten O, Bunæs AC, Mekasha S, Røhr ÅK, Kommedal E, Ludviksen JA, Arntzen MØ, Schmidt B, Zurich RH, van Sorge NM, Eijsink VGH, Krengel U, Mollnes TE, Lewis NE, Nizet V, Vaaje-Kolstad G
RgGuinier 3.3 nm
Dmax 12.1 nm
VolumePorod 50 nm3

SASDK42 – Chitin-binding protein CbpD (Pseudomonas aeruginosa), ESRF BM29 data

Chitin-binding protein CbpD experimental SAS data
OTHER model
Sample: Chitin-binding protein CbpD monomer, 39 kDa Pseudomonas aeruginosa protein
Buffer: 15 mM Tris-HCl 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2020 Oct 1
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. Nat Commun 12(1):1230 (2021)
Askarian F, Uchiyama S, Masson H, Sørensen HV, Golten O, Bunæs AC, Mekasha S, Røhr ÅK, Kommedal E, Ludviksen JA, Arntzen MØ, Schmidt B, Zurich RH, van Sorge NM, Eijsink VGH, Krengel U, Mollnes TE, Lewis NE, Nizet V, Vaaje-Kolstad G
RgGuinier 3.2 nm
Dmax 12.0 nm
VolumePorod 64131 nm3

SASDJL7 – Oxidised fimbrial BcfH protein

Hypothetical exported protein experimental SAS data
CORAL model
Sample: Hypothetical exported protein trimer, 83 kDa Salmonella typhimurium (strain … protein
Buffer: 25 mM TRIS, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Aug 14
Salmonella enterica BcfH is a trimeric thioredoxin-like bifunctional enzyme with both thiol oxidase and disulfide isomerase activities. Antioxid Redox Signal (2021)
Subedi P, Paxman JJ, Wang G, Hor L, Hong Y, Verderosa AD, Whitten AE, Panjikar S, Santos-Martin CF, Martin JL, Totsika M, Heras B
RgGuinier 3.2 nm
Dmax 11.5 nm
VolumePorod 93 nm3

SASDFR7 – Rabbit muscle fructose-bisphosphate aldolase A, K229M mutant

Fructose-bisphosphate aldolase A experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Fructose-bisphosphate aldolase A tetramer, 157 kDa Oryctolagus cuniculus protein
Buffer: 20 mM HEPES, pH: 7
Experiment: SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Jun 14
Rabbit muscle fructose-1,6-bisphosphate aldolase K229M mutant
Normand Cyr
RgGuinier 3.6 nm
Dmax 11.8 nm
VolumePorod 213 nm3

SASDJU5 – BIP18SN

BIP18SN experimental SAS data
MODELLER model
Sample: BIP18SN monomer, 80 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2016 Nov 28
Self-assembly and regulation of protein cages from pre-organised coiled-coil modules. Nat Commun 12(1):939 (2021)
Lapenta F, Aupič J, Vezzoli M, Strmšek Ž, Da Vela S, Svergun DI, Carazo JM, Melero R, Jerala R
RgGuinier 4.6 nm
Dmax 12.4 nm

SASDJV5 – SBP12(9.b)

SBP1(9.b)SBP2(9.b) experimental SAS data
MODELLER model
Sample: SBP1(9.b) monomer, 40 kDa synthetic construct protein
SBP2(9.b) monomer, 40 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2019 Jun 19
Self-assembly and regulation of protein cages from pre-organised coiled-coil modules. Nat Commun 12(1):939 (2021)
Lapenta F, Aupič J, Vezzoli M, Strmšek Ž, Da Vela S, Svergun DI, Carazo JM, Melero R, Jerala R
RgGuinier 4.0 nm
Dmax 11.8 nm

SASDJA6 – Complement C5

Complement C5 experimental SAS data
CUSTOM IN-HOUSE model
Sample: Complement C5 monomer, 186 kDa Homo sapiens protein
Buffer: 20mM Tris pH, 75mM NaCl, and 3% glycerol, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Sep 12
The allosteric modulation of Complement C5 by knob domain peptides. Elife 10 (2021)
Macpherson A, Laabei M, Ahdash Z, Graewert MA, Birtley JR, Schulze ME, Crennell S, Robinson SA, Holmes B, Oleinikovas V, Nilsson PH, Snowden J, Ellis V, Mollnes TE, Deane CM, Svergun D, Lawson AD, van den Elsen JM
RgGuinier 4.8 nm
Dmax 17.6 nm
VolumePorod 392 nm3

SASDKQ2 – TET12SN(2CC)

TET12(1.10)SN-f5(2CC) experimental SAS data
DAMMIF model
Sample: TET12(1.10)SN-f5(2CC) monomer, 55 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Dec 13
Designed folding pathway of modular coiled-coil-based proteins. Nat Commun 12(1):940 (2021)
Aupič J, Strmšek Ž, Lapenta F, Pahovnik D, Pisanski T, Drobnak I, Ljubetič A, Jerala R
RgGuinier 3.4 nm
Dmax 9.6 nm
VolumePorod 158 nm3

SASDKR2 – TET12SN(22CC)

TET12(1.10)SN-f5(22CC) experimental SAS data
DAMMIF model
Sample: TET12(1.10)SN-f5(22CC) monomer, 55 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2017 Dec 5
Designed folding pathway of modular coiled-coil-based proteins. Nat Commun 12(1):940 (2021)
Aupič J, Strmšek Ž, Lapenta F, Pahovnik D, Pisanski T, Drobnak I, Ljubetič A, Jerala R
RgGuinier 3.4 nm
Dmax 10.4 nm
VolumePorod 165 nm3

SASDKS2 – TET12SN(222CC)

TET12(1.10)SN-f5(222CC) experimental SAS data
MODELLER model
Sample: TET12(1.10)SN-f5(222CC) monomer, 55 kDa synthetic construct protein
Buffer: 20 mM Tris 150 mM NaCl 10% glycerol, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Sep 15
Designed folding pathway of modular coiled-coil-based proteins. Nat Commun 12(1):940 (2021)
Aupič J, Strmšek Ž, Lapenta F, Pahovnik D, Pisanski T, Drobnak I, Ljubetič A, Jerala R
RgGuinier 3.4 nm
Dmax 10.6 nm
VolumePorod 170 nm3