Browse by MODEL: No model

SASDVS9 – Mouse High mobility group protein B2 (HMGB2)-dsDNA complex 1:2

High mobility group protein B2Double stranded DNA 20mer experimental SAS data
High mobility group protein B2 Double stranded DNA 20mer Kratky plot
Sample: High mobility group protein B2 monomer, 26 kDa Mus musculus protein
Double stranded DNA 20mer monomer, 12 kDa DNA
Buffer: Tris 50mM, NaCl 150mM, pH: 7
Experiment: SAXS data collected at 13A, Taiwan Photon Source, NSRRC on 2024 Apr 27
High mobility group protein B2 (HMGB2)
Chun I Tu
RgGuinier 3.3 nm
Dmax 13.0 nm
VolumePorod 49 nm3

SASDXP8 – Repeats-in-toxin domain Block V of Bifunctional hemolysin/adenylate cyclase, 10 mM KCl

Repeats-in-toxin domain Block V of adenylate cyclase toxin experimental SAS data
Repeats-in-toxin domain Block V of adenylate cyclase toxin Kratky plot
Sample: Repeats-in-toxin domain Block V of adenylate cyclase toxin monomer, 19 kDa Bordetella pertussis protein
Buffer: 50 mM Tris, 5 mM DTT, 10 mM KCl, pH: 7.5
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2024 Dec 12
Ion-selective conformational stabilization of a disordered repeats-in-toxin protein domain. Biophys J (2025)
Gudinas AP, Shambharkar GM, Chang MP, Fernández D, Matsui T, Mai DJ
RgGuinier 3.7 nm
Dmax 15.6 nm
VolumePorod 50 nm3

SASDXT8 – Repeats-in-toxin domain Block V of Bifunctional hemolysin/adenylate cyclase, 2 mM SrCl2

Repeats-in-toxin domain Block V of adenylate cyclase toxin experimental SAS data
Repeats-in-toxin domain Block V of adenylate cyclase toxin Kratky plot
Sample: Repeats-in-toxin domain Block V of adenylate cyclase toxin monomer, 19 kDa Bordetella pertussis protein
Buffer: 50 mM Tris, 5 mM DTT, 2 mM SrCl2, pH: 7.5
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2025 Jul 22
Ion-selective conformational stabilization of a disordered repeats-in-toxin protein domain. Biophys J (2025)
Gudinas AP, Shambharkar GM, Chang MP, Fernández D, Matsui T, Mai DJ
RgGuinier 2.7 nm
Dmax 11.5 nm
VolumePorod 34 nm3

SASDXU8 – Repeats-in-toxin domain Block V of Bifunctional hemolysin/adenylate cyclase, 3 mM SrCl2

Repeats-in-toxin domain Block V of adenylate cyclase toxin experimental SAS data
Repeats-in-toxin domain Block V of adenylate cyclase toxin Kratky plot
Sample: Repeats-in-toxin domain Block V of adenylate cyclase toxin monomer, 19 kDa Bordetella pertussis protein
Buffer: 50 mM Tris, 5 mM DTT, 3 mM SrCl2, pH: 7.5
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2025 Jul 22
Ion-selective conformational stabilization of a disordered repeats-in-toxin protein domain. Biophys J (2025)
Gudinas AP, Shambharkar GM, Chang MP, Fernández D, Matsui T, Mai DJ
RgGuinier 2.4 nm
Dmax 11.0 nm
VolumePorod 33 nm3

SASDXW8 – Repeats-in-toxin domain Block V of Bifunctional hemolysin/adenylate cyclase, 3 mM BaCl2

Repeats-in-toxin domain Block V of adenylate cyclase toxin experimental SAS data
Repeats-in-toxin domain Block V of adenylate cyclase toxin Kratky plot
Sample: Repeats-in-toxin domain Block V of adenylate cyclase toxin monomer, 19 kDa Bordetella pertussis protein
Buffer: 50 mM Tris, 5 mM DTT, 3 mM BaCl2, pH: 7.5
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2025 Jul 22
Ion-selective conformational stabilization of a disordered repeats-in-toxin protein domain. Biophys J (2025)
Gudinas AP, Shambharkar GM, Chang MP, Fernández D, Matsui T, Mai DJ
RgGuinier 2.5 nm
Dmax 10.9 nm
VolumePorod 34 nm3

SASDWW3 – crTPpart2 of cysteine synthase A (CysK)

crTPpart2 of cysteine synthase A (CysK) experimental SAS data
crTPpart2 of cysteine synthase A (CysK) Kratky plot
Sample: CrTPpart2 of cysteine synthase A (CysK) monomer, 16 kDa Paulinella chromatophora protein
Buffer: 20 mM HEPES, 300 mM NaCl, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2022 Sep 14
The Paulinella chromatophore transit peptide part2 adopts a structural fold similar to the γ-glutamyl-cyclotransferase fold Plant Physiology (2025)
Klimenko V, Reiners J, Applegate V, Reimann K, Popowicz G, Hoeppner A, Papadopoulos A, Smits S, Nowack E
RgGuinier 1.7 nm
Dmax 6.2 nm
VolumePorod 28 nm3

SASDXM2 – RAR/RXR heterodimer : BMS493 : DR0 element

Retinoic acid receptor alphaDirect Repeat binding site with zero-base-pair spacingBMS493 (RAR inverse agonist ligand)Retinoid X receptor alpha experimental SAS data
Retinoic acid receptor alpha Direct Repeat binding site with zero-base-pair spacing BMS493 (RAR inverse agonist ligand) Retinoid X receptor alpha Kratky plot
Sample: Retinoic acid receptor alpha monomer, 39 kDa Mus musculus protein
Direct Repeat binding site with zero-base-pair spacing monomer, 10 kDa DNA
BMS493 (RAR inverse agonist ligand) monomer, 0 kDa
Retinoid X receptor alpha monomer, 38 kDa Homo sapiens protein
Buffer: 20 mM Tris HCl, 75 mM NaCl, 75 mM KCl, 2 mM CHAPS, 4 mM MgCl₂, 12 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Apr 18
New structural insights into the control of the retinoic acid receptors RAR/RXR by DNA, ligands, and transcriptional coregulators. Nucleic Acids Res 53(18) (2025)
Tambones I, Sagar A, Vankova P, Loginov D, Carivenc C, Rochel N, Bourguet W, Man P, Bernadó P, le Maire A
RgGuinier 3.6 nm
Dmax 13.1 nm
VolumePorod 121 nm3

SASDXN2 – RAR/RXR heterodimer : BMS493 : DR0L element

Retinoic acid receptor alphaBMS493 (RAR inverse agonist ligand)Direct Repeat binding site with zero-base-pair spacing (long sequence)Retinoid X receptor alpha experimental SAS data
Retinoic acid receptor alpha BMS493 (RAR inverse agonist ligand) Direct Repeat binding site with zero-base-pair spacing (long sequence) Retinoid X receptor alpha Kratky plot
Sample: Retinoic acid receptor alpha monomer, 39 kDa Mus musculus protein
BMS493 (RAR inverse agonist ligand) monomer, 0 kDa
Direct Repeat binding site with zero-base-pair spacing (long sequence) monomer, 19 kDa DNA
Retinoid X receptor alpha monomer, 38 kDa Homo sapiens protein
Buffer: 20 mM Tris HCl, 75 mM NaCl, 75 mM KCl, 2 mM CHAPS, 4 mM MgCl₂, 12 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Dec 12
New structural insights into the control of the retinoic acid receptors RAR/RXR by DNA, ligands, and transcriptional coregulators. Nucleic Acids Res 53(18) (2025)
Tambones I, Sagar A, Vankova P, Loginov D, Carivenc C, Rochel N, Bourguet W, Man P, Bernadó P, le Maire A
RgGuinier 4.1 nm
Dmax 14.8 nm
VolumePorod 152 nm3

SASDXP2 – RAR/RXR heterodimer : BMS493 : DR1 element

Retinoic acid receptor alphaBMS493 (RAR inverse agonist ligand)Retinoid X receptor alphaDirect Repeat binding site with one-base-pair spacing experimental SAS data
Retinoic acid receptor alpha BMS493 (RAR inverse agonist ligand) Retinoid X receptor alpha Direct Repeat binding site with one-base-pair spacing Kratky plot
Sample: Retinoic acid receptor alpha monomer, 39 kDa Mus musculus protein
BMS493 (RAR inverse agonist ligand) monomer, 0 kDa
Retinoid X receptor alpha monomer, 38 kDa Homo sapiens protein
Direct Repeat binding site with one-base-pair spacing monomer, 11 kDa DNA
Buffer: 20 mM Tris HCl, 75 mM NaCl, 75 mM KCl, 2 mM CHAPS, 4 mM MgCl₂, 12 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Apr 20
New structural insights into the control of the retinoic acid receptors RAR/RXR by DNA, ligands, and transcriptional coregulators. Nucleic Acids Res 53(18) (2025)
Tambones I, Sagar A, Vankova P, Loginov D, Carivenc C, Rochel N, Bourguet W, Man P, Bernadó P, le Maire A
RgGuinier 3.8 nm
Dmax 13.9 nm
VolumePorod 120 nm3

SASDXQ2 – RAR/RXR heterodimer : BMS493 : DR5 element

Retinoic acid receptor alphaBMS493 (RAR inverse agonist ligand)Retinoid X receptor alphaDirect Repeat binding site with five-base-pair spacing experimental SAS data
Retinoic acid receptor alpha BMS493 (RAR inverse agonist ligand) Retinoid X receptor alpha Direct Repeat binding site with five-base-pair spacing Kratky plot
Sample: Retinoic acid receptor alpha monomer, 39 kDa Mus musculus protein
BMS493 (RAR inverse agonist ligand) monomer, 0 kDa
Retinoid X receptor alpha monomer, 38 kDa Homo sapiens protein
Direct Repeat binding site with five-base-pair spacing monomer, 13 kDa DNA
Buffer: 20 mM Tris HCl, 75 mM NaCl, 75 mM KCl, 2 mM CHAPS, 4 mM MgCl₂, 12 mM TCEP, pH: 7.5
Experiment: SAXS data collected at SWING, SOLEIL on 2022 Sep 12
New structural insights into the control of the retinoic acid receptors RAR/RXR by DNA, ligands, and transcriptional coregulators. Nucleic Acids Res 53(18) (2025)
Tambones I, Sagar A, Vankova P, Loginov D, Carivenc C, Rochel N, Bourguet W, Man P, Bernadó P, le Maire A
RgGuinier 3.9 nm
Dmax 14.3 nm
VolumePorod 130 nm3