Browse by ORGANISM: other species

SASDKF5 – the Gemin2/delta linker Survival Motor Neuron-like protein 1 (SMN1, Δ36-119, S130D) complex from Schizosaccharomyces pombe

Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)Survival motor neuron-like protein 1 (Δ36-119) experimental SAS data
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) Kratky plot
Sample: Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Survival motor neuron-like protein 1 (Δ36-119) monomer, 8 kDa Schizosaccharomyces pombe protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 30
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 2.7 nm
Dmax 9.0 nm

SASDK66 – the Gemin2/delta linker Survival Motor Neuron-like protein 1 (SMN1, Δ36-119) complex from Schizosaccharomyces pombe

Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)Survival motor neuron-like protein 1 (Δ36-119) experimental SAS data
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) Kratky plot
Sample: Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) monomer, 18 kDa Schizosaccharomyces pombe (strain … protein
Survival motor neuron-like protein 1 (Δ36-119) monomer, 8 kDa Schizosaccharomyces pombe protein
Buffer: 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2017 Apr 29
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex Nucleic Acids Research (2021)
Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U
RgGuinier 4.8 nm
Dmax 16.0 nm
VolumePorod 386 nm3

SASDH39 – Complex of Archaeoglobus fulgidus Argonaute with dsDNA (5'p-ATTGTACGTACAAT)

Piwi protein AF_13185'-phosphorilated 14-mer DNA oligoduplex experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Piwi protein AF_1318 dimer, 102 kDa Archaeoglobus fulgidus protein
5'-phosphorilated 14-mer DNA oligoduplex dimer, 9 kDa DNA
Buffer: 20 mM TrisHCl, pH 7.5, 5 mM MgCl2, 150 mM NaCl and 2 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Jul 6
Prokaryotic Argonaute from Archaeoglobus fulgidus interacts with DNA as a homodimer. Sci Rep 11(1):4518 (2021)
Golovinas E, Rutkauskas D, Manakova E, Jankunec M, Silanskas A, Sasnauskas G, Zaremba M
RgGuinier 3.2 nm
Dmax 10.1 nm
VolumePorod 158 nm3

SASDH49 – Complex of Archaeoglobus fulgidus Argonaute monomeric mutant with dsDNA (5'p-ATTGTACGTACAAT)

Piwi protein AF_1318 delta (296-303) mutant5'-phosphorilated 14-mer DNA oligoduplex experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Piwi protein AF_1318 delta (296-303) mutant monomer, 50 kDa Archaeoglobus fulgidus protein
5'-phosphorilated 14-mer DNA oligoduplex dimer, 9 kDa DNA
Buffer: 20 mM TrisHCl, pH 7.5, 5 mM MgCl2, 150 mM NaCl and 2 mM DTT, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Jul 6
Prokaryotic Argonaute from Archaeoglobus fulgidus interacts with DNA as a homodimer. Sci Rep 11(1):4518 (2021)
Golovinas E, Rutkauskas D, Manakova E, Jankunec M, Silanskas A, Sasnauskas G, Zaremba M
RgGuinier 2.8 nm
Dmax 9.6 nm
VolumePorod 109 nm3

SASDK42 – Chitin-binding protein CbpD (Pseudomonas aeruginosa), ESRF BM29 data

Chitin-binding protein CbpD experimental SAS data
OTHER model
Sample: Chitin-binding protein CbpD monomer, 39 kDa Pseudomonas aeruginosa protein
Buffer: 15 mM Tris-HCl 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BM29, ESRF on 2020 Oct 1
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. Nat Commun 12(1):1230 (2021)
Askarian F, Uchiyama S, Masson H, Sørensen HV, Golten O, Bunæs AC, Mekasha S, Røhr ÅK, Kommedal E, Ludviksen JA, Arntzen MØ, Schmidt B, Zurich RH, van Sorge NM, Eijsink VGH, Krengel U, Mollnes TE, Lewis NE, Nizet V, Vaaje-Kolstad G
RgGuinier 3.2 nm
Dmax 12.0 nm
VolumePorod 64131 nm3

SASDJQ5 – Chitin-binding protein CbpD (Pseudomonas aeruginosa) at 24 °C

Chitin-binding protein CbpD experimental SAS data
OTHER model
Sample: Chitin-binding protein CbpD monomer, 39 kDa Pseudomonas aeruginosa protein
Buffer: 15 mM Tris-HCl 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at Bruker Nanostar with InCoatec Cu microsource, RECX, University of Oslo on 2019 Jul 19
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. Nat Commun 12(1):1230 (2021)
Askarian F, Uchiyama S, Masson H, Sørensen HV, Golten O, Bunæs AC, Mekasha S, Røhr ÅK, Kommedal E, Ludviksen JA, Arntzen MØ, Schmidt B, Zurich RH, van Sorge NM, Eijsink VGH, Krengel U, Mollnes TE, Lewis NE, Nizet V, Vaaje-Kolstad G
RgGuinier 3.3 nm
Dmax 12.1 nm
VolumePorod 50 nm3

SASDJR5 – Chitin-binding protein CbpD (Pseudomonas aeruginosa) at 37°C

Chitin-binding protein CbpD experimental SAS data
Chitin-binding protein CbpD Kratky plot
Sample: Chitin-binding protein CbpD monomer, 39 kDa Pseudomonas aeruginosa protein
Buffer: 15 mM Tris-HCl 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at Bruker Nanostar with InCoatec Cu microsource, RECX, University of Oslo on 2019 Aug 14
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. Nat Commun 12(1):1230 (2021)
Askarian F, Uchiyama S, Masson H, Sørensen HV, Golten O, Bunæs AC, Mekasha S, Røhr ÅK, Kommedal E, Ludviksen JA, Arntzen MØ, Schmidt B, Zurich RH, van Sorge NM, Eijsink VGH, Krengel U, Mollnes TE, Lewis NE, Nizet V, Vaaje-Kolstad G
RgGuinier 3.5 nm
Dmax 15.0 nm
VolumePorod 63 nm3

SASDJL7 – Oxidised fimbrial BcfH protein

Hypothetical exported protein experimental SAS data
CORAL model
Sample: Hypothetical exported protein trimer, 83 kDa Salmonella typhimurium (strain … protein
Buffer: 25 mM TRIS, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Aug 14
Salmonella enterica BcfH is a trimeric thioredoxin-like bifunctional enzyme with both thiol oxidase and disulfide isomerase activities. Antioxid Redox Signal (2021)
Subedi P, Paxman JJ, Wang G, Hor L, Hong Y, Verderosa AD, Whitten AE, Panjikar S, Santos-Martin CF, Martin JL, Totsika M, Heras B
RgGuinier 3.2 nm
Dmax 11.5 nm
VolumePorod 93 nm3

SASDFR7 – Rabbit muscle fructose-bisphosphate aldolase A, K229M mutant

Fructose-bisphosphate aldolase A experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Fructose-bisphosphate aldolase A tetramer, 157 kDa Oryctolagus cuniculus protein
Buffer: 20 mM HEPES, pH: 7
Experiment: SAXS data collected at Xenocs BioXolver L with MetalJet, Département de Biochimie, Université de Montréal on 2019 Jun 14
Rabbit muscle fructose-1,6-bisphosphate aldolase K229M mutant
Normand Cyr
RgGuinier 3.6 nm
Dmax 11.8 nm
VolumePorod 213 nm3

SASDJ55 – S-adenosylmethionine (SAM) lyase Svi3-3

Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) experimental SAS data
Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) Kratky plot
Sample: Phage-encoded SAM lyase Svi3-3 (including N-terminal His6-tag and Tev cleavage site) trimer, 56 kDa Unknown environmental phage protein
Buffer: 25 mM Tris-HCl, 150 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2016 Dec 9
Structure and mechanism of a phage-encoded SAM lyase revises catalytic function of enzyme family. Elife 10 (2021)
Guo X, Söderholm A, Kanchugal P S, Isaksen GV, Warsi O, Eckhard U, Trigüis S, Gogoll A, Jerlström-Hultqvist J, Åqvist J, Andersson DI, Selmer M
RgGuinier 2.5 nm
Dmax 9.3 nm
VolumePorod 85 nm3