Small Angle Scattering Biological Data Bank SASBDB

SASDBB7 – Human NEI like DNA glycosylase 1 (NEIL1) bound to DNA

Endonuclease 8-like 1dsDNA experimental SAS data

Sample:	Endonuclease 8-like 1 monomer, 45 kDa Homo sapiens protein dsDNA monomer, 2 kDa DNA
Buffer:	25mM HEPES 100mM NaCl 1mM DTT, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Jan 20

Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase. Nucleic Acids Res 45(5):2897-2909 (2017)
Prakash A, Moharana K, Wallace SS, Doublié S

R_g^Guinier	3.3	nm
D_max	17.5	nm
Volume^Porod	92	nm³

SASDBC7 – Human NEI like DNA glycosylase 1 (NEIL1)

Endonuclease 8-like 1 experimental SAS data

Sample:	Endonuclease 8-like 1 monomer, 45 kDa Homo sapiens protein
Buffer:	25mM HEPES 300mM NaCl 1mM DTT 10% Glycerol, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2015 Mar 13

Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase. Nucleic Acids Res 45(5):2897-2909 (2017)
Prakash A, Moharana K, Wallace SS, Doublié S

R_g^Guinier	3.6	nm
D_max	15.0	nm
Volume^Porod	81	nm³

SASDBD7 – Human Proliferating Cell Nuclear Antigen (PCNA)

Proliferating cell nuclear antigen experimental SAS data

Sample:	Proliferating cell nuclear antigen trimer, 89 kDa Homo sapiens protein
Buffer:	25mM HEPES 100mM NaCl 1mM DTT, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Jan 20

Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase. Nucleic Acids Res 45(5):2897-2909 (2017)
Prakash A, Moharana K, Wallace SS, Doublié S

R_g^Guinier	3.4	nm
D_max	9.7	nm
Volume^Porod	128	nm³

SASDBG6 – Ribosome biogenesis protein 15 (Nop15)

Ribosome biogenesis protein 15 experimental SAS data

Sample:	Ribosome biogenesis protein 15 monomer, 17 kDa Saccharomyces cerevisiae protein
Buffer:	25 mM HEPES, 500 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2013 Apr 25

Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate. Nucleic Acids Res 45(5):2829-2837 (2017)
Zhang J, Gonzalez LE, Hall TMT

R_g^Guinier	2.4	nm
D_max	10.3	nm
Volume^Porod	38	nm³

SASDBA7 – Human NEI like DNA glycosylase 1 (NEIL1) bound to Proliferating Cell Nuclear Antigen (PCNA) and DNA

Endonuclease 8-like 1dsDNAProliferating cell nuclear antigen experimental SAS data

Sample:	Endonuclease 8-like 1 monomer, 45 kDa Homo sapiens protein dsDNA monomer, 2 kDa DNA Proliferating cell nuclear antigen monomer, 30 kDa Homo sapiens protein
Buffer:	25mM HEPES 100mM NaCl 1mM DTT, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2016 Jan 20

Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase. Nucleic Acids Res 45(5):2897-2909 (2017)
Prakash A, Moharana K, Wallace SS, Doublié S

R_g^Guinier	3.4	nm
D_max	16.4	nm
Volume^Porod	113	nm³

SASDC83 – Dimeric apoptosis regulator BAX (Bcl-2 associated X)

Apoptosis regulator BAX (Bcl-2 associated X) experimental SAS data

Sample:	Apoptosis regulator BAX (Bcl-2 associated X) dimer, 42 kDa Homo sapiens protein
Buffer:	20mM sodium phosphate 100mM NaCl, pH: 8
Experiment:	SAXS data collected at 23A, Taiwan Photon Source, NSRRC on 2015 May 28

Oligomerization process of Bcl-2 associated X protein revealed from intermediate structures in solution. Phys Chem Chem Phys 19(11):7947-7954 (2017)
Shih O, Yeh YQ, Liao KF, Sung TC, Chiang YW, Jeng US

R_g^Guinier	3.0	nm
D_max	9.5	nm
Volume^Porod	86	nm³

SASDC93 – Tetrameric apoptosis regulator BAX (Bcl-2 associated X)

Sample:	Apoptosis regulator BAX (Bcl-2 associated X) tetramer, 85 kDa Homo sapiens protein
Buffer:	20mM sodium phosphate 100mM NaCl, pH: 8
Experiment:	SAXS data collected at 23A, Taiwan Photon Source, NSRRC on 2015 May 28

R_g^Guinier	3.6	nm
D_max	12.0	nm
Volume^Porod	180	nm³

SASDBF7 – Dps2, DNA binding protein under starvation conditions (SEC-SAXS)

N-terminal truncated DNA protection during starvation protein 2 experimental SAS data

Sample:	N-terminal truncated DNA protection during starvation protein 2 dodecamer, 279 kDa Deinococcus radiodurans R1 protein
Buffer:	20 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at BM29, ESRF on 2013 Nov 22

SAXS Structural Studies of Dps from Deinococcus radiodurans Highlights the Conformation of the Mobile N-Terminal Extensions. J Mol Biol 429(5):667-687 (2017)
Santos SP, Cuypers MG, Round A, Finet S, Narayanan T, Mitchell EP, Romão CV

R_g^Guinier	4.2	nm
D_max	12.7	nm
Volume^Porod	445	nm³

SASDBG7 – Dps1, DNA binding protein under starvation conditions (SEC-SAXS)

DNA protection during starvation protein 1 experimental SAS data

Sample:	DNA protection during starvation protein 1 dodecamer, 276 kDa Deinococcus radiodurans R1 protein
Buffer:	20 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at BM29, ESRF on 2013 Nov 22

R_g^Guinier	4.2	nm
D_max	12.8	nm
Volume^Porod	437	nm³

SASDBH7 – Dps1 truncated, DNA binding protein under starvation conditions (SEC-SAXS)

N-terminal truncated DNA protection during starvation protein 1 experimental SAS data

Sample:	N-terminal truncated DNA protection during starvation protein 1 dodecamer, 216 kDa Deinococcus radiodurans R1 protein
Buffer:	20 mM Tris-HCl, 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at BM29, ESRF on 2013 Nov 22

R_g^Guinier	3.9	nm
D_max	10.0	nm
Volume^Porod	291	nm³

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