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41 hits found for Rodríguez

SASDTN5 – The D2 domain of E3 ubiquitin-protein ligase DTX3L (I101-Q200)

E3 ubiquitin-protein ligase DTX3L experimental SAS data
E3 ubiquitin-protein ligase DTX3L Kratky plot
Sample: E3 ubiquitin-protein ligase DTX3L tetramer, 46 kDa Homo sapiens protein
Buffer: 30 mM HEPES, 350 mM NaCl, 5% (v/v) glycerol, 0.5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2021 Dec 6
Oligomerisation mediated by the D2 domain of DTX3L is critical for DTX3L-PARP9 reading function of mono-ADP-ribosylated androgen receptor. bioRxiv (2023)
...Rodríguez C, Yang C, Alanen HI, Eki R, Abbas TA, Maksimainen MM, Glumoff T, Duman R, Wagner A, Paschal BM, Lehtiö L
RgGuinier 2.9 nm
Dmax 112.0 nm
VolumePorod 91 nm3

SASDMQ6 – The N-terminus of E3 ubiquitin-protein ligase DTX3L (M1-Q200)

E3 ubiquitin-protein ligase DTX3L experimental SAS data
E3 ubiquitin-protein ligase DTX3L Kratky plot
Sample: E3 ubiquitin-protein ligase DTX3L pentamer, 114 kDa Homo sapiens protein
Buffer: 30 mM HEPES, 350 mM NaCl, 10% glycerol, 0.5 mM TCEP, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Feb 6
Reconstitution of the DTX3L-PARP9 complex reveals determinants for high affinity heterodimerization and multimeric assembly. Biochem J (2022)
...Rodríguez C, Yang CS, Alanen HI, Liu F, Paschal BM, Lehtiö L
RgGuinier 4.7 nm
Dmax 17.0 nm
VolumePorod 200 nm3

SASDUS6 – Amino-terminal domain of Infectious Bursal Disease Virus VP3 at pH8.0

Structural polyprotein experimental SAS data
Structural polyprotein Kratky plot
Sample: Structural polyprotein dimer, 26 kDa Infectious bursal disease … protein
Buffer: 50 mM Tris, 500 mM NaCl, 2 mM DTT, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2017 Sep 27
Structure of the aminoterminal domain of the birnaviral multifunctional VP3 protein and its unexplored critical role. PNAS Nexus 3(12):pgae521 (2024)
...Rodríguez JM, Castón JR, Terebiznik MR, Bernadó P, Verdaguer N
RgGuinier 2.4 nm
Dmax 10.0 nm
VolumePorod 52 nm3

SASDN77 – Truncated histone shaperone protein SET/TAF-Ib DC

SET nuclear proto-oncogene experimental SAS data
AMBER model
Sample: SET nuclear proto-oncogene dimer, 53 kDa Homo sapiens protein
Buffer: Sodium phosphate buffer, pH: 6.3
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Nov 11
PP2A is activated by cytochrome c upon formation of a diffuse encounter complex with SET/TAF-Iβ Computational and Structural Biotechnology Journal (2022)
...Rodríguez F, Elena-Real C, Molodenskiy D, Díaz-Quintana A, Martinho M, Gerbaud G, González-Arzola K, Velázquez-Campoy A, Svergun D, Belle V, De la Rosa M, Díaz-Moreno I
RgGuinier 3.1 nm
Dmax 9.7 nm
VolumePorod 87 nm3

SASDN87 – Mixture 1:2 of truncated histone shaperone protein SET/TAF-Ib DC with cytochrome c

Cytochrome cSET nuclear proto-oncogene experimental SAS data
SASREF model
Sample: Cytochrome c dimer, 24 kDa Homo sapiens protein
SET nuclear proto-oncogene dimer, 53 kDa Homo sapiens protein
Buffer: Sodium phosphate buffer, pH: 6.3
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Nov 11
PP2A is activated by cytochrome c upon formation of a diffuse encounter complex with SET/TAF-Iβ Computational and Structural Biotechnology Journal (2022)
...Rodríguez F, Elena-Real C, Molodenskiy D, Díaz-Quintana A, Martinho M, Gerbaud G, González-Arzola K, Velázquez-Campoy A, Svergun D, Belle V, De la Rosa M, Díaz-Moreno I
RgGuinier 4.2 nm
Dmax 16.0 nm

SASD2F7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 1

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 1 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 1 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 1 monomer, 36 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Oct 17
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.7 nm

SASD2G7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 2

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 2 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 2 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 2 monomer, 36 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Oct 17
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.8 nm

SASD2H7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 3

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 3 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 3 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 3 monomer, 36 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2025 Mar 13
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.7 nm

SASD2J7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 4

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 4 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 4 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 4 monomer, 36 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Oct 17
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.7 nm

SASD2K7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 5

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 5 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 5 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 5 monomer, 36 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2025 May 29
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.8 nm

SASD2M7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 6

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 6 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 6 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 6 monomer, 36 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Dec 6
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.8 nm

SASDUR7 – Infectious Bursal Disease Virus VP3 (central domains at pH 8.0)

Structural polyprotein (Capsid protein VP3: K947R; Δ756-843; Δ977-1012) experimental SAS data
Structural polyprotein (Capsid protein VP3: K947R; Δ756-843; Δ977-1012) Kratky plot
Sample: Structural polyprotein (Capsid protein VP3: K947R; Δ756-843; Δ977-1012) monomer, 18 kDa Infectious bursal disease … protein
Buffer: 50 mM TRIS, 500 mM NaCl, 2 mM DTT,, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Jul 2
Structure of the aminoterminal domain of the birnaviral multifunctional VP3 protein and its unexplored critical role. PNAS Nexus 3(12):pgae521 (2024)
...Rodríguez JM, Castón JR, Terebiznik MR, Bernadó P, Verdaguer N
RgGuinier 2.5 nm
Dmax 10.0 nm
VolumePorod 21 nm3

SASDUS7 – Infectious Bursal Disease Virus VP3 (C-terminal deleted at pH 8.0)

Structural polyprotein (Capsid protein VP3: K947R; Δ977-1012) experimental SAS data
Structural polyprotein (Capsid protein VP3: K947R; Δ977-1012) Kratky plot
Sample: Structural polyprotein (Capsid protein VP3: K947R; Δ977-1012) dimer, 55 kDa Infectious bursal disease … protein
Buffer: 50 mM TRIS, 500 mM NaCl, 2 mM DTT, pH: 8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Jul 1
Structure of the aminoterminal domain of the birnaviral multifunctional VP3 protein and its unexplored critical role. PNAS Nexus 3(12):pgae521 (2024)
...Rodríguez JM, Castón JR, Terebiznik MR, Bernadó P, Verdaguer N
RgGuinier 4.1 nm
Dmax 15.0 nm
VolumePorod 110 nm3

SASD2T7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 7

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 7 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 7 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 7 monomer, 37 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2025 Mar 13
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.9 nm

SASD2U7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 8

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 8 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 8 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 8 monomer, 36 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2025 Mar 13
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.9 nm

SASD2V7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 9

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 9 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 9 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 9 monomer, 37 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2025 Mar 13
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.8 nm

SASD2W7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 10

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 10 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 10 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 10 monomer, 37 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Dec 6
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 3.0 nm

SASD2X7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 11

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 11 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 11 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 11 monomer, 38 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2025 Mar 13
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 3.0 nm

SASD2Y7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 12

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 12 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 12 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 12 monomer, 38 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Oct 17
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 3.0 nm

SASD2Z7 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 13

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 13 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 13 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 13 monomer, 38 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2025 May 29
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 2.9 nm

SASD228 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 14

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 14 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 14 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 14 monomer, 38 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Sep 21
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 3.0 nm

SASD238 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 15

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 15 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 15 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 15 monomer, 38 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Sep 21
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 3.3 nm

SASD248 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 16

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 16 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 16 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 16 monomer, 39 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Sep 21
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 3.0 nm

SASD258 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 17

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 17 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 17 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 17 monomer, 38 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Sep 21
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 3.2 nm

SASD268 – Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 18

Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 18 experimental SAS data
Conformational ensembles of domain–linker–domain (DLD) protein chimera consisting of Glycosyl hydrolase and Carbohydrate binding module 18 Rg histogram
Sample: Glycosyl hydrolase (GH) linked to a Carbohydrate-binding module (CBM) 18 monomer, 45 kDa Chimera protein
Buffer: 50 mM Na-phosphate, 2 mM TCEP, pH: 6
Experiment: SAXS data collected at SWING, SOLEIL on 2024 Sep 21
Conformational ensembles of flexible multidomain proteins: How close are we to accurate and reliable predictions? Biophysical Journal (2026)
Rodriguez S, Fournet A, Bartels S, Pajkos M, Clerc I, Carrière L, Thureau A, Montanier C, Dumon C, Allemand F, Cortés J, Bernadó P
RgGuinier 3.3 nm

SASDEN8 – Intracellular region of the human Cyclin and CBS domain divalent metal cation transport mediator-4 in complex with Phosphatase of Regenerating Liver-1 and MgATP

CNNM4_BAT-cNMP-CtailProtein tyrosine phosphatase type IVA 1 experimental SAS data
CORAL model
Sample: CNNM4_BAT-cNMP-Ctail dimer, 96 kDa Homo sapiens protein
Protein tyrosine phosphatase type IVA 1 dimer, 40 kDa Mus musculus protein
Buffer: HEPES buffer pH 7.4, 200 mM NaCl , 1mM DTT, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2018 Sep 17
Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4. Int J Mol Sci 20(24) (2019)
...Rodríguez C, Corral-Rodríguez MÁ, Campos-Zarraga I, Simón J, Kostantin E, Hardy S, Díaz Quintana A, Zubillaga Lizeaga M, Merino N, Diercks T, Blanco FJ, Díaz Moreno I, Martínez-Chantar ML, Tremblay ML...
RgGuinier 4.4 nm
Dmax 18.3 nm
VolumePorod 216 nm3

SASDEP8 – Intracellular region of the human Cyclin and CBS domain divalent metal cation transport mediator-4 in complex with Phosphatase of Regenerating Liver-1

CNNM4_BAT-cNMP-CtailProtein tyrosine phosphatase type IVA 1 experimental SAS data
CORAL model
Sample: CNNM4_BAT-cNMP-Ctail dimer, 96 kDa Homo sapiens protein
Protein tyrosine phosphatase type IVA 1 dimer, 40 kDa Mus musculus protein
Buffer: HEPES buffer pH 7.4, 200 mM NaCl , 1mM DTT, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2018 Aug 2
Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4. Int J Mol Sci 20(24) (2019)
...Rodríguez C, Corral-Rodríguez MÁ, Campos-Zarraga I, Simón J, Kostantin E, Hardy S, Díaz Quintana A, Zubillaga Lizeaga M, Merino N, Diercks T, Blanco FJ, Díaz Moreno I, Martínez-Chantar ML, Tremblay ML...
RgGuinier 4.7 nm
Dmax 18.5 nm
VolumePorod 226 nm3

SASDEQ8 – Intracellular region of the human Cyclin and CBS domain divalent metal cation transport mediator-4

CNNM4_BAT-cNMP-Ctail experimental SAS data
CORAL model
Sample: CNNM4_BAT-cNMP-Ctail dimer, 96 kDa Homo sapiens protein
Buffer: HEPES buffer pH 7.4, 200 mM NaCl , 1mM DTT, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2018 Aug 2
Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4. Int J Mol Sci 20(24) (2019)
...Rodríguez C, Corral-Rodríguez MÁ, Campos-Zarraga I, Simón J, Kostantin E, Hardy S, Díaz Quintana A, Zubillaga Lizeaga M, Merino N, Diercks T, Blanco FJ, Díaz Moreno I, Martínez-Chantar ML, Tremblay ML...
RgGuinier 4.0 nm
Dmax 16.6 nm
VolumePorod 156 nm3

SASDER8 – Cyclic nucleotide homology domain of the human Cyclin and CBS domain divalent metal cation transport mediator-4

CNNM4_cNMP experimental SAS data
GASBOR model
Sample: CNNM4_cNMP dimer, 42 kDa Homo sapiens protein
Buffer: HEPES buffer pH 7.4, 200 mM NaCl , 1mM DTT, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2018 Feb 7
Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4. Int J Mol Sci 20(24) (2019)
...Rodríguez C, Corral-Rodríguez MÁ, Campos-Zarraga I, Simón J, Kostantin E, Hardy S, Díaz Quintana A, Zubillaga Lizeaga M, Merino N, Diercks T, Blanco FJ, Díaz Moreno I, Martínez-Chantar ML, Tremblay ML...
RgGuinier 2.6 nm
Dmax 9.7 nm
VolumePorod 102 nm3

SASDES8 – Intracellular region of the human Cyclin and CBS domain divalent metal cation transport mediator-4 in complex with MgATP

CNNM4_BAT-cNMP-Ctail experimental SAS data
CORAL model
Sample: CNNM4_BAT-cNMP-Ctail dimer, 96 kDa Homo sapiens protein
Buffer: HEPES buffer pH 7.4, 200 mM NaCl , 1mM DTT, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2018 Sep 17
Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4. Int J Mol Sci 20(24) (2019)
...Rodríguez C, Corral-Rodríguez MÁ, Campos-Zarraga I, Simón J, Kostantin E, Hardy S, Díaz Quintana A, Zubillaga Lizeaga M, Merino N, Diercks T, Blanco FJ, Díaz Moreno I, Martínez-Chantar ML, Tremblay ML...
RgGuinier 3.9 nm
Dmax 14.3 nm
VolumePorod 149 nm3

SASDU79 – BRUTUS-LIKE2 N-Terminal Region (BTSL2-N)

Zinc finger protein BRUTUS-like At1g18910 experimental SAS data
ALPHAFOLD model
Sample: Zinc finger protein BRUTUS-like At1g18910 monomer, 98 kDa Arabidopsis thaliana protein
Buffer: 10 mM MES, 15 mM NaCl, pH: 6.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2023 Feb 8
Iron-sensing and redox properties of the hemerythrin-like domains of Arabidopsis BRUTUS and BRUTUS-LIKE2 proteins. Nat Commun 16(1):3865 (2025)
...Rodríguez-Celma J, Franceschetti M, Mundy JEA, Svistunenko DA, Bradley JM, Le Brun NE, Balk J
RgGuinier 3.4 nm
Dmax 9.8 nm
VolumePorod 162 nm3

SASDWT6 – Frataxin bound to tailored nanobody 16C10

Frataxin, mitochondrialNanobody 16C10 experimental SAS data
COOT model
Sample: Frataxin, mitochondrial monomer, 14 kDa Homo sapiens protein
Nanobody 16C10 monomer, 15 kDa synthetic construct protein
Buffer: 20 mM Tris, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Sep 18
Nanobodies as tools for studying human frataxin biology. Commun Biol (2026)
...Rodríguez NA, Aran M, Parreño V, Bok M, Hermoso JA, Ibañez LI, Santos J
RgGuinier 2.4 nm
Dmax 8.0 nm
VolumePorod 37 nm3

SASDDE7 – Class I chitinase 1 from Agave tequilana

Chitinase 1 experimental SAS data
DAMMIF model
Sample: Chitinase 1 monomer, 32 kDa Agave tequilana protein
Buffer: MES 50 mM, pH: 6
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2017 Apr 26
A biophysical and structural study of two chitinases from Agave tequilana and their potential role as defense proteins. FEBS J (2019)
...Rodríguez-Hernández A, Cano-Sánchez P, Gómez-Velasco H, Hernández-Santoyo A, Siliqi D, Rodríguez-Romero A
RgGuinier 2.6 nm
Dmax 9.7 nm
VolumePorod 52 nm3

SASDVF9 – Mouse complex murine Immunoglobulin E (IgE) antibody with profilin

Murine Immunoglobulin E (IgE) antibodiesProfilin-2 experimental SAS data
DAMFILT model
Sample: Murine Immunoglobulin E (IgE) antibodies monomer, 165 kDa Mus musculus protein
Profilin-2 monomer, 18 kDa Hevea brasiliensis protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Oct 3
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
...Rodríguez-Romero A
RgGuinier 6.0 nm
Dmax 19.9 nm
VolumePorod 504 nm3

SASDDA6 – Class I chitinase 2 from Agave tequilana

Chitinase 2 experimental SAS data
DAMMIF model
Sample: Chitinase 2 monomer, 32 kDa Agave tequilana protein
Buffer: MES 50 mM, pH: 6
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2017 Apr 19
A biophysical and structural study of two chitinases from Agave tequilana and their potential role as defense proteins. FEBS J (2019)
...Rodríguez-Hernández A, Cano-Sánchez P, Gómez-Velasco H, Hernández-Santoyo A, Siliqi D, Rodríguez-Romero A
RgGuinier 2.4 nm
Dmax 9.8 nm
VolumePorod 49 nm3

SASDWS6 – Frataxin bound to tailored nanobody 28F6

Frataxin, mitochondrialNanobody 28F6 experimental SAS data
ALPHAFOLD model
Sample: Frataxin, mitochondrial monomer, 14 kDa Homo sapiens protein
Nanobody 28F6 monomer, 15 kDa synthetic construct protein
Buffer: 20 mM Tris, 150 mM NaCl, pH: 7.5
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Sep 18
Nanobodies as tools for studying human frataxin biology. Commun Biol (2026)
...Rodríguez NA, Aran M, Parreño V, Bok M, Hermoso JA, Ibañez LI, Santos J
RgGuinier 2.2 nm
Dmax 7.4 nm
VolumePorod 36 nm3

SASDVG9 – Mouse murine Immunoglobulin E (IgE) antibodies

Murine Immunoglobulin E (IgE) antibodies experimental SAS data
DAMMIN model
Sample: Murine Immunoglobulin E (IgE) antibodies monomer, 165 kDa Mus musculus protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Oct 3
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
...Rodríguez-Romero A
RgGuinier 5.5 nm
Dmax 19.2 nm
VolumePorod 422 nm3

SASDVH9 – allergen Hev b 8 protein, Profilin-2 (TAG)

Profilin-2 experimental SAS data
CORAL model
Sample: Profilin-2 monomer, 18 kDa Hevea brasiliensis protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2024 Oct 3
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
...Rodríguez-Romero A
RgGuinier 2.0 nm
Dmax 7.4 nm
VolumePorod 30 nm3

SASDXH4 – Mouse complex murine Immunoglobulin E (IgE) antibody with profilin (without HisTAG)

Murine Immunoglobulin E (IgE) antibodiesProfilin-2 experimental SAS data
SREFLEX model
Sample: Murine Immunoglobulin E (IgE) antibodies monomer, 165 kDa Mus musculus protein
Profilin-2 monomer, 18 kDa Hevea brasiliensis protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2025 Apr 11
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
...Rodríguez-Romero A
RgGuinier 5.7 nm
Dmax 19.9 nm
VolumePorod 450 nm3

SASDXK4 – Mouse murine Immunoglobulin E (IgE) antibody

Murine Immunoglobulin E (IgE) antibodies experimental SAS data
DAMMIF model
Sample: Murine Immunoglobulin E (IgE) antibodies monomer, 165 kDa Mus musculus protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2025 Apr 11
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
...Rodríguez-Romero A
RgGuinier 5.2 nm
Dmax 16.3 nm
VolumePorod 420 nm3

SASDXJ4 – Allergen Hev b 8 protein, Profilin-2

Profilin-2 experimental SAS data
GASBOR model
Sample: Profilin-2 monomer, 18 kDa Hevea brasiliensis protein
Buffer: 20 mM Tris, 50 mM NaCl, pH: 8.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2025 Apr 11
Allergen-induced structural rearrangements in IgE: insights from SAXS and molecular dynamics. Int J Biol Macromol :147658 (2025)
...Rodríguez-Romero A
RgGuinier 1.7 nm
Dmax 4.5 nm
VolumePorod 21 nm3