SASBDB entries for UniProt ID:

SASDKW6 – SARS-CoV-2 non-structural protein 10/non-structural protein 14/non-structural protein 16 triplex (nsp10/nsp14/nsp16)

UniProt ID: P0DTD1 (5926-6452) Replicase polyprotein 1ab (non-structural protein 14)

UniProt ID: P0DTC1 (4254-4392) Replicase polyprotein 1a (non-structural protein 10)

UniProt ID: P0DTD1 (6799-7096) Replicase polyprotein 1ab (non-structural protein 16)
Replicase polyprotein 1ab (non-structural protein 14)Replicase polyprotein 1a (non-structural protein 10)Replicase polyprotein 1ab (non-structural protein 16) experimental SAS data
GASBOR model
Sample: Replicase polyprotein 1ab (non-structural protein 14) monomer, 60 kDa Severe acute respiratory … protein
Replicase polyprotein 1a (non-structural protein 10) monomer, 15 kDa Severe acute respiratory … protein
Replicase polyprotein 1ab (non-structural protein 16) monomer, 33 kDa Severe acute respiratory … protein
Buffer: 50 mM Tris, 150 mM NaCl, 5 mM MgCl2, 2 mM β-mercaptoethanol, pH: 8.5
Experiment: SAXS data collected at BM29, ESRF on 2020 Dec 11
Despite the odds: formation of the SARS-CoV-2 methylation complex Nucleic Acids Research (2024)
Matsuda A, Plewka J, Rawski M, Mourão A, Zajko W, Siebenmorgen T, Kresik L, Lis K, Jones A, Pachota M, Karim A, Hartman K, Nirwal S, Sonani R, Chykunova Y, Minia I, Mak P, Landthaler M, Nowotny M, Dubin G, Sattler M, Suder P, Popowicz G, Pyrć K, Czarna A
RgGuinier 4.7 nm
Dmax 11.4 nm
VolumePorod 113 nm3

SASDKY6 – ParD2 antitoxin from Vibrio cholerae in low salt pH 8

UniProt ID: P58093 (1-80) Antitoxin ParD
Antitoxin ParD experimental SAS data
Antitoxin ParD Kratky plot
Sample: Antitoxin ParD dodecamer, 108 kDa Vibrio cholerae serotype … protein
Buffer: 20 mM Tris, 150 mM NaCl, 1 mM TCEP, pH: 8
Experiment: SAXS data collected at SWING, SOLEIL on 2020 Jul 18
Entropic pressure controls the oligomerization of the Vibrio cholerae ParD2 antitoxin Acta Crystallographica Section D Structural Biology 77(7):904-920 (2021)
Garcia-Rodriguez G, Girardin Y, Volkov A, Singh R, Muruganandam G, Van Dyck J, Sobott F, Versées W, Charlier D, Loris R
RgGuinier 3.4 nm
Dmax 13.9 nm
VolumePorod 190 nm3

SASDKM7 – Sulfite reductase flavoprotein-60

UniProt ID: P38038 (53-599) Sulfite reductase [NADPH] flavoprotein alpha-component (Assimilatory NADPH-dependent sulfite reductase flavoprotein)
Sulfite reductase [NADPH] flavoprotein alpha-component (Assimilatory NADPH-dependent sulfite reductase flavoprotein) experimental SAS data
Sample: Sulfite reductase [NADPH] flavoprotein alpha-component (Assimilatory NADPH-dependent sulfite reductase flavoprotein) monomer, 61 kDa Escherichia coli (strain … protein
Buffer: 50 mM KPi, 100 mM NaCl, 1 mM EDTA, pH: 7.8
Experiment: SANS data collected at EQ-SANS (BL-6), Spallation Neutron Source on 2018 Jul 11
NADPH-dependent sulfite reductase flavoprotein adopts an extended conformation unique to this diflavin reductase Journal of Structural Biology 205(2):170-179 (2019)
Tavolieri A, Murray D, Askenasy I, Pennington J, McGarry L, Stanley C, Stroupe M
RgGuinier 3.2 nm
Dmax 11.6 nm
VolumePorod 60 nm3

SASDKN7 – Sulfite reductase flavoprotein-60-ΔAAPSQS

UniProt ID: P38038 (53-599) Sulfite reductase [NADPH] flavoprotein alpha-component (Assimilatory NADPH-dependent sulfite reductase flavoprotein)
Sulfite reductase [NADPH] flavoprotein alpha-component (Assimilatory NADPH-dependent sulfite reductase flavoprotein) experimental SAS data
Sample: Sulfite reductase [NADPH] flavoprotein alpha-component (Assimilatory NADPH-dependent sulfite reductase flavoprotein) monomer, 61 kDa Escherichia coli (strain … protein
Buffer: 50 mM KPi, 100 mM NaCl, 1 mM EDTA, pH: 7.8
Experiment: SANS data collected at EQ-SANS (BL-6), Spallation Neutron Source on 2018 Jul 11
NADPH-dependent sulfite reductase flavoprotein adopts an extended conformation unique to this diflavin reductase Journal of Structural Biology 205(2):170-179 (2019)
Tavolieri A, Murray D, Askenasy I, Pennington J, McGarry L, Stanley C, Stroupe M
RgGuinier 3.2 nm
Dmax 11.3 nm
VolumePorod 73 nm3

SASDKP7 – Probable transcriptional regulatory protein Lrp/AsnC protein Rv2324

UniProt ID: P71888 (1-148) Probable transcriptional regulatory protein (Probably AsnC-family)
Probable transcriptional regulatory protein (Probably AsnC-family) experimental SAS data
DAMMIF model
Sample: Probable transcriptional regulatory protein (Probably AsnC-family) dimer, 36 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 20 mM Tris, 150 mM NaCl, 2 mM EDTA, pH: 7.5
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2019 Mar 1
Mycobacterium tuberculosis Rv2324 is a multifunctional feast/famine regulatory protein involved in growth, DNA replication and damage control. Int J Biol Macromol 252:126459 (2023)
Dubey S, Maurya RK, Shree S, Kumar S, Jahan F, Krishnan MY, Ramachandran R
RgGuinier 2.7 nm
Dmax 11.6 nm
VolumePorod 156 nm3

SASDKQ7 – Probable transcriptional regulatory protein Lrp/AsnC protein Rv2324 in the presence of methionine

UniProt ID: P71888 (1-148) Probable transcriptional regulatory protein (Probably AsnC-family)
Probable transcriptional regulatory protein (Probably AsnC-family) experimental SAS data
DAMMIF model
Sample: Probable transcriptional regulatory protein (Probably AsnC-family) octamer, 143 kDa Mycobacterium tuberculosis (strain … protein
Buffer: 20 mM Tris, 150 mM NaCl, 2 mM EDTA, 2 mM methionine, pH: 7.5
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2019 Dec 5
Mycobacterium tuberculosis Rv2324 is a multifunctional feast/famine regulatory protein involved in growth, DNA replication and damage control. Int J Biol Macromol 252:126459 (2023)
Dubey S, Maurya RK, Shree S, Kumar S, Jahan F, Krishnan MY, Ramachandran R
RgGuinier 4.0 nm
Dmax 13.8 nm
VolumePorod 246 nm3

SASDKR7 – Hunchback mRNA translation repression complex of Brat-NHL, Pum-HD, Nanos-ZnF and hb NRE2 RNA

UniProt ID: Q8MQJ9 (756-1037) Brain tumor protein

UniProt ID: P25822 (1093-1426) Maternal protein pumilio

UniProt ID: P25724 (301-392) Protein nanos

UniProt ID: None (None-None) hunchback mRNA Nanos Response Element 2
Brain tumor proteinMaternal protein pumilioProtein nanoshunchback mRNA Nanos Response Element 2 experimental SAS data
Brain tumor protein Maternal protein pumilio Protein nanos hunchback mRNA Nanos Response Element 2 Kratky plot
Sample: Brain tumor protein monomer, 32 kDa Drosophila melanogaster protein
Maternal protein pumilio monomer, 38 kDa Drosophila melanogaster protein
Protein nanos monomer, 11 kDa Drosophila melanogaster protein
Hunchback mRNA Nanos Response Element 2 monomer, 7 kDa Drosophila melanogaster RNA
Buffer: 50 mM Tris, 150 mM NaCl, 1 mM DTT, 3% glycerol, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Nov 12
Structure and dynamics of the quaternary hunchback mRNA translation repression complex. Nucleic Acids Res 49(15):8866-8885 (2021)
Macošek J, Simon B, Linse JB, Jagtap PKA, Winter SL, Foot J, Lapouge K, Perez K, Rettel M, Ivanović MT, Masiewicz P, Murciano B, Savitski MM, Loedige I, Hub JS, Gabel F, Hennig J
RgGuinier 3.7 nm
Dmax 12.7 nm
VolumePorod 114 nm3

SASDKS7 – Hydroxypyruvate aldolase (HpcH/HpaI aldolase), wild-type in HEPES, NaCl and MgCl2

UniProt ID: None (None-None) HpcH/HpaI aldolase
HpcH/HpaI aldolase experimental SAS data
GASBOR model
Sample: HpcH/HpaI aldolase hexamer, 165 kDa Rhizorhabdus wittichii RW1 protein
Buffer: 20 mM HEPES, 100 mM NaCl, 20 mg/l MgCl2, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Dec 15
Substrate Induced Movement of the Metal Cofactor between Active and Resting State Angewandte Chemie International Edition (2022)
Marsden S, Wijma H, Mohr M, Justo I, Hagedoorn P, Laustsen J, Jeffries C, Svergun D, Mestrom L, McMillan D, Bento I, Hanefeld U
RgGuinier 3.3 nm
Dmax 9.0 nm
VolumePorod 224 nm3

SASDKT7 – Hydroxypyruvate aldolase (HpcH/HpaI aldolase), S116A mutant in HEPES, NaCl and MgCl2

UniProt ID: None (None-None) HpcH/HpaI aldolase (S116A)
HpcH/HpaI aldolase (S116A) experimental SAS data
GASBOR model
Sample: HpcH/HpaI aldolase (S116A) hexamer, 165 kDa Sphingomonas wittichii (strain … protein
Buffer: 20 mM HEPES, 100 mM NaCl, 20 mg/l MgCl2, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Dec 15
Substrate Induced Movement of the Metal Cofactor between Active and Resting State Angewandte Chemie International Edition (2022)
Marsden S, Wijma H, Mohr M, Justo I, Hagedoorn P, Laustsen J, Jeffries C, Svergun D, Mestrom L, McMillan D, Bento I, Hanefeld U
RgGuinier 3.3 nm
Dmax 9.1 nm
VolumePorod 222 nm3

SASDKU7 – Hydroxypyruvate aldolase (HpcH/HpaI aldolase), S116C mutant in HEPES, NaCl and MgCl2

UniProt ID: None (None-None) HpcH/HpaI aldolase (S116C)
HpcH/HpaI aldolase (S116C) experimental SAS data
GASBOR model
Sample: HpcH/HpaI aldolase (S116C) hexamer, 165 kDa Rhizorhabdus wittichii RW1 protein
Buffer: 20 mM HEPES, 100 mM NaCl, 20 mg/l MgCl2, pH: 7.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2019 Dec 15
Substrate Induced Movement of the Metal Cofactor between Active and Resting State Angewandte Chemie International Edition (2022)
Marsden S, Wijma H, Mohr M, Justo I, Hagedoorn P, Laustsen J, Jeffries C, Svergun D, Mestrom L, McMillan D, Bento I, Hanefeld U
RgGuinier 3.3 nm
Dmax 9.0 nm
VolumePorod 223 nm3