Small Angle Scattering Biological Data Bank SASBDB

SASBDB entries for UniProt ID:

SASDL99 – Ectodomain of human syndecan-4 isoform-2 Monomer

UniProt ID: P31431-2 (19-153) Syndecan-4

Ectodomain of human syndecan-4 isoform-2 Monomer Rg histogram

Sample:	Syndecan-4 monomer, 18 kDa Homo sapiens protein
Buffer:	10 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at SWING, SOLEIL on 2018 Jul 4

Extended disorder at the cell surface: the conformational landscape of the ectodomains of syndecans Matrix Biology Plus :100081 (2021)
Gondelaud F, Bouakil M, Le Fèvre A, Erica Miele A, Chirot F, Duclos B, Liwo A, Ricard-Blum S

R_g^Guinier

4.2

SASDLA9 – Ectodomain of human syndecan-4 isoform-2 Dimer

UniProt ID: P31431-2 (19-153) Syndecan-4

Sample:	Syndecan-4 dimer, 36 kDa Homo sapiens protein
Buffer:	10 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at SWING, SOLEIL on 2018 Jul 4

R_g^Guinier

5.9

SASDLE9 – Suppressor of Copper Sensitivity C protein from Caulobacter crescentus

UniProt ID: Q9A747 (23-246) Thioredoxin domain-containing protein

Thioredoxin domain-containing protein experimental SAS data

Suppressor of Copper Sensitivity C protein from Caulobacter crescentus Rg histogram

Sample:	Thioredoxin domain-containing protein trimer, 73 kDa Caulobacter vibrioides (strain … protein
Buffer:	25 mM HEPES, 150 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Aug 21

The suppressor of copper sensitivity protein C from Caulobacter crescentus is a trimeric disulfide isomerase that binds copper(I) with subpicomolar affinity Acta Crystallographica Section D Structural Biology 78(3):337-352 (2022)
Petit G, Hong Y, Djoko K, Whitten A, Furlong E, McCoy A, Gulbis J, Totsika M, Martin J, Halili M

R_g^Guinier	3.9	nm
D_max	12.0	nm
Volume^Porod	97	nm³

SASDLF9 – 200-310 region of Hendra virus P/V/W protein (PNT3)

UniProt ID: P0C1C6 (200-310) Protein W

200-310 region of Hendra virus P/V/W protein (PNT3) Rg histogram

Sample:	Protein W monomer, 15 kDa Hendra virus (isolate … protein
Buffer:	50 mM sodium phosphate, 5 mM EDTA, pH: 6.5
Experiment:	SAXS data collected at SWING, SOLEIL on 2021 Jun 12

Identification of a Region in the Common Amino-terminal Domain of Hendra Virus P, V, and W Proteins Responsible for Phase Transition and Amyloid Formation Biomolecules 11(9):1324 (2021)
Salladini E, Gondelaud F, Nilsson J, Pesce G, Bignon C, Murrali M, Fabre R, Pierattelli R, Kajava A, Horvat B, Gerlier D, Mathieu C, Longhi S

R_g^Guinier	3.4	nm
D_max	15.5	nm
Volume^Porod	38	nm³

SASDLG9 – Menangle virus (MenV) phosphoprotein, amino acids 209-388 (coiled-coil/flexible linker/binding domain and C352S mutation)

UniProt ID: Q91MK1 (209-388) Phosphoprotein

Sample:	Phosphoprotein tetramer, 79 kDa Menangle virus protein
Buffer:	12.5 mM MOPS/KOH pH 7.0, 250 mM NaCl, pH: 7
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2016 Nov 16

Structural Analysis of the Menangle Virus P Protein Reveals a Soft Boundary between Ordered and Disordered Regions Viruses 13(9):1737 (2021)
Webby M, Herr N, Bulloch E, Schmitz M, Keown J, Goldstone D, Kingston R

R_g^Guinier	6.3	nm
D_max	23.4	nm
Volume^Porod	524	nm³

SASDLH9 – Menangle virus (MenV) phosphoprotein, amino acids 267-388 (flexible linker/binding domain and C352S mutation)

UniProt ID: Q91MK1 (267-388) Phosphoprotein

Sample:	Phosphoprotein monomer, 13 kDa Menangle virus protein
Buffer:	12.5 mM MOPS/KOH pH 7.0, 150 mM NaCl, pH: 7
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2016 Aug 17

R_g^Guinier	3.1	nm
D_max	12.2	nm
Volume^Porod	20	nm³

SASDLJ9 – Menangle virus (MenV) phosphoprotein C-terminal fragment, amino acids 267-328 (flexible linker)

UniProt ID: Q91MK1 (267-328) Phosphoprotein

Sample:	Phosphoprotein monomer, 6 kDa Menangle virus protein
Buffer:	12.5 mM Tris/HCl pH 8.5, 150 mM NaCl, pH: 8.5
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2017 Aug 15

R_g^Guinier	2.5	nm
D_max	10.3	nm
Volume^Porod	12	nm³

SASDLK9 – Hendra virus W protein in 1 M urea, 5 mM DTT

UniProt ID: P0C1C6 (2-448) Protein W

Hendra virus W protein in 1 M urea, 5 mM DTT Rg histogram

Sample:	Protein W monomer, 53 kDa Hendra virus (isolate … protein
Buffer:	20 mM HEPES, 150 mM NaCl, 1 M urea, 5 mM DTT, pH: 7
Experiment:	SAXS data collected at SWING, SOLEIL on 2021 Jun 12

Experimental Evidence of Intrinsic Disorder and Amyloid Formation by the Henipavirus W Proteins International Journal of Molecular Sciences 23(2):923 (2022)
Pesce G, Gondelaud F, Ptchelkine D, Nilsson J, Bignon C, Cartalas J, Fourquet P, Longhi S

R_g^Guinier	7.2	nm
D_max	24.0	nm
Volume^Porod	338	nm³

SASDLL9 – Nipah henipavirus W protein in 1 M urea, 5 mM DTT

UniProt ID: P0C1C7 (2-450) Protein W

Nipah henipavirus W protein in 1 M urea, 5 mM DTT Rg histogram

Sample:	Protein W monomer, 53 kDa Nipah henipavirus protein
Buffer:	20 mM HEPES, 150 mM NaCl, 1 M urea, 5 mM DTT, pH: 7
Experiment:	SAXS data collected at SWING, SOLEIL on 2021 Jun 12

R_g^Guinier	7.1	nm
D_max	24.5	nm
Volume^Porod	327	nm³

SASDLN9 – Hepatocyte growth factor HGF/SF receptor - fragment MET567

UniProt ID: P08581 (25-567) Hepatocyte growth factor receptor

Hepatocyte growth factor receptor experimental SAS data

Sample:	Hepatocyte growth factor receptor monomer, 62 kDa Homo sapiens protein
Buffer:	25 mM Tris, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BM29, ESRF on 2018 Jan 27

Dimerization of kringle 1 domain from hepatocyte growth factor/scatter factor provides a potent MET receptor agonist Life Science Alliance 5(12):e202201424 (2022)
de Nola G, Leclercq B, Mougel A, Taront S, Simonneau C, Forneris F, Adriaenssens E, Drobecq H, Iamele L, Dubuquoy L, Melnyk O, Gherardi E, de Jonge H, Vicogne J

R_g^Guinier	3.2	nm
D_max	11.7	nm
Volume^Porod	126	nm³

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