Browse by MODEL: Ab initio only

SASDML5 – Proteoliposomes composed of lipids from A/Puerto Rico/8/34 (H1N1) virus envelope together with the HA LI45 peptides loaded with M1 protein

Proteoliposomes composed of lipids from A/Puerto Rico/8/34 (H1N1) virus envelope together with the HA LI45 peptides loaded with M1 protein (lipid:M1 molar ration 4:1) experimental SAS data
OTHER [STATIC IMAGE] model
Sample: Proteoliposomes composed of lipids from A/Puerto Rico/8/34 (H1N1) virus envelope together with the HA LI45 peptides loaded with M1 protein (lipid:M1 molar ration 4:1) monomer, 2000 kDa
Buffer: 100 mM NaCl, 50 mM MES buffer, pH: 6.8
Experiment: SAXS data collected at EMBL P12, PETRA III on 2018 Nov 26
The Cytoplasmic Tail of Influenza A Virus Hemagglutinin and Membrane Lipid Composition Change the Mode of M1 Protein Association with the Lipid Bilayer Membranes 11(10):772 (2021)
Kordyukova L, Konarev P, Fedorova N, Shtykova E, Ksenofontov A, Loshkarev N, Dadinova L, Timofeeva T, Abramchuk S, Moiseenko A, Baratova L, Svergun D, Batishchev O

SASDJ44 – Human Complex I assembly factor ACAD9 complexed with ECSIT

Complex I assembly factor ACAD9, mitochondrialEvolutionarily conserved signaling intermediate in Toll pathway, mitochondrial experimental SAS data
DAMFILT model
Sample: Complex I assembly factor ACAD9, mitochondrial dimer, 130 kDa Homo sapiens protein
Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial dimer, 93 kDa Homo sapiens protein
Buffer: 25mM Tris-HCl, 150mM NaCl, 0.1mM DTT, and 5% glycerol, pH: 8
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2017 Nov 2
Molecular mechanism of interactions between ACAD9 and binding partners in mitochondrial respiratory complex I assembly iScience 24(10):103153 (2021)
Xia C, Lou B, Fu Z, Mohsen A, Shen A, Vockley J, Kim J
RgGuinier 5.1 nm
Dmax 16.8 nm
VolumePorod 514 nm3

SASDJ54 – Human Complex I assembly factor ACAD9 complexed with ECSIT and SMT3-NDUFAF1

Complex I assembly factor ACAD9, mitochondrialEvolutionarily conserved signaling intermediate in Toll pathway, mitochondrialComplex I intermediate-associated protein 30, mitochondrial experimental SAS data
DAMMIF model
Sample: Complex I assembly factor ACAD9, mitochondrial tetramer, 259 kDa Homo sapiens protein
Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial tetramer, 184 kDa Homo sapiens protein
Complex I intermediate-associated protein 30, mitochondrial tetramer, 190 kDa Homo sapiens protein
Buffer: 25mM Tris-HCl, 150mM NaCl, 0.1mM DTT, and 5% glycerol, pH: 8
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2017 Nov 2
Molecular mechanism of interactions between ACAD9 and binding partners in mitochondrial respiratory complex I assembly iScience 24(10):103153 (2021)
Xia C, Lou B, Fu Z, Mohsen A, Shen A, Vockley J, Kim J
RgGuinier 6.6 nm
Dmax 21.6 nm
VolumePorod 1340 nm3

SASDK46 – Coronin from Trypanosoma brucei brucei (C-terminal coiled coil domain)

Coronin experimental SAS data
GASBOR model
Sample: Coronin tetramer, 21 kDa Trypanosoma brucei brucei … protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR - Institute of Microbial Technology (IMTech) on 2019 Oct 17
Structural insights into kinetoplastid coronin oligomerization domain and F-actin interaction Current Research in Structural Biology (2021)
Parihar P, Singh A, Karade S, Sahasrabuddhe A, Pratap J
RgGuinier 3.3 nm
Dmax 12.5 nm
VolumePorod 22 nm3

SASDK56 – Cell cycle associated protein MOB1, putative, from Leishmania donovani

Cell cycle associated protein MOB1, putative experimental SAS data
GASBOR model
Sample: Cell cycle associated protein MOB1, putative monomer, 27 kDa Leishmania donovani (strain … protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl, pH: 7.4
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2017 Jun 22
Structural insights into kinetoplastid coronin oligomerization domain and F-actin interaction Current Research in Structural Biology (2021)
Parihar P, Singh A, Karade S, Sahasrabuddhe A, Pratap J
RgGuinier 2.1 nm
Dmax 5.6 nm
VolumePorod 59 nm3

SASDJK4 – RNA polymerase core complex

DNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase subunit betaDNA-directed RNA polymerase subunit beta'DNA-directed RNA polymerase subunit omega experimental SAS data
DAMFILT model
Sample: DNA-directed RNA polymerase subunit alpha dimer, 78 kDa Mycobacterium tuberculosis protein
DNA-directed RNA polymerase subunit beta monomer, 129 kDa Mycobacterium tuberculosis protein
DNA-directed RNA polymerase subunit beta' monomer, 147 kDa Mycobacterium tuberculosis protein
DNA-directed RNA polymerase subunit omega monomer, 12 kDa Mycobacterium tuberculosis protein
Buffer: 10 mM Tris-Cl, 100 mM NaCl, 10 mM MgCl2, 0.1 mM EDTA, 5% Glycerol, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2018 Mar 8
Structural and biochemical characterization of RNA polymerase core and UvrD complex: a key component in transcription coupled DNA repair
Ravishankar Ramachandran
RgGuinier 5.1 nm
Dmax 19.3 nm
VolumePorod 262 nm3

SASDJL4 – RNA polymerase core subunit in complex with ATP-dependent DNA helicase UvrD1

DNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase subunit betaDNA-directed RNA polymerase subunit beta'DNA-directed RNA polymerase subunit omegaATP-dependent DNA helicase UvrD1 experimental SAS data
DAMMIF model
Sample: DNA-directed RNA polymerase subunit alpha dimer, 75 kDa Mycobacterium tuberculosis protein
DNA-directed RNA polymerase subunit beta monomer, 129 kDa Mycobacterium tuberculosis protein
DNA-directed RNA polymerase subunit beta' monomer, 147 kDa Mycobacterium tuberculosis protein
DNA-directed RNA polymerase subunit omega monomer, 12 kDa Mycobacterium tuberculosis protein
ATP-dependent DNA helicase UvrD1 monomer, 85 kDa Mycobacterium tuberculosis protein
Buffer: 10 mM Tris-Cl, 100 mM NaCl, 10 mM MgCl2, 0.1 mM EDTA, 5% Glycerol, pH: 8
Experiment: SAXS data collected at BM29, ESRF on 2018 Mar 11
Structural and biochemical characterization of RNA polymerase core and UvrD complex: a key component in transcription coupled DNA repair
Ravishankar Ramachandran
RgGuinier 7.5 nm
Dmax 22.2 nm
VolumePorod 898 nm3

SASDJM7 – Iron-sulfur cluster assembly protein (IscU)

Iron-sulfur cluster assembly protein experimental SAS data
DAMFILT model
Sample: Iron-sulfur cluster assembly protein trimer, 42 kDa Plasmodium falciparum (isolate … protein
Buffer: 50 mM Tris-Cl, 300 mM NaCl, 5% Glycerol, pH: 7.5
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2019 May 5
[Fe-S] cluster biogenesis and unusual assembly of the ISC scaffold complex in Plasmodium falciparum mitochondrion
Ravishankar Ramachandran
RgGuinier 5.4 nm
Dmax 11.1 nm
VolumePorod 177 nm3

SASDJN7 – Cysteine desulfurase, Iron-sulfur cluster assembly protein (IscS_IscU) complex

Iron-sulfur cluster assembly proteinCysteine desulfurase, putative experimental SAS data
DAMMIF model
Sample: Iron-sulfur cluster assembly protein tetramer, 56 kDa Plasmodium falciparum (isolate … protein
Cysteine desulfurase, putative tetramer, 204 kDa Plasmodium falciparum (isolate … protein
Buffer: 50 mM Tris-Cl, 300 mM NaCl, 5% Glycerol, pH: 7.5
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2019 Sep 4
[Fe-S] cluster biogenesis and unusual assembly of the ISC scaffold complex in Plasmodium falciparum mitochondrion
Ravishankar Ramachandran
RgGuinier 6.4 nm
Dmax 17.6 nm
VolumePorod 1100 nm3

SASDJP7 – Cysteine desulfurase, Iron-sulfur cluster assembly protein, Protein ISD11 (IscS_IscU_Isd11) complex

Cysteine desulfurase, putativeIron-sulfur cluster assembly proteinProtein ISD11 experimental SAS data
DAMMIF model
Sample: Cysteine desulfurase, putative tetramer, 204 kDa Plasmodium falciparum (isolate … protein
Iron-sulfur cluster assembly protein tetramer, 56 kDa Plasmodium falciparum (isolate … protein
Protein ISD11 tetramer, 43 kDa Plasmodium falciparum (isolate … protein
Buffer: 50 mM Tris-Cl, 300 mM NaCl, 5% Glycerol, pH: 7.5
Experiment: SAXS data collected at Anton Paar SAXSpace, CSIR-Central Drug Research Institute on 2019 Sep 19
[Fe-S] cluster biogenesis and unusual assembly of the ISC scaffold complex in Plasmodium falciparum mitochondrion
Ravishankar Ramachandran
RgGuinier 7.1 nm
Dmax 17.9 nm
VolumePorod 950 nm3